Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATGGCGGCGTCTCCGTCTTCTCCCCATGCCGCCCCCGGAGTTAGCGGCCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgcccgccttttccccctccgcctcagacagagtgggaacggatggttgataaaatgtgaggttgagacttaggatctcgatctggttgatgtta...

Basic information

species Zea mays
transcript GRMZM2G094444_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5566944|gb|AI881855.1|AI881855
EST:     CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATTGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
EST: gi|37418585|gb|CF646962.1|CF646962
EST:     CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
EST: gi|101396104|gb|EB819979.1|EB819979
EST:     CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
EST: gi|31355816|gb|CD440173.1|CD440173
EST:     CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATTGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
EST: gi|93013218|gb|EB638738.1|EB638738
EST:     CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
EST: gi|71328899|gb|DR801132.1|DR801132
EST:     CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
EST: gi|91049487|gb|EB159905.1|EB159905
EST:     CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
EST: gi|211518405|gb|FL045671.1|FL045671
EST:     CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATTGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
EST: gi|91055834|gb|EB166252.1|EB166252
EST:     CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
EST: gi|74244669|gb|DT652583.1|DT652583
EST:     CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
EST: gi|211518397|gb|FL045663.1|FL045663
EST:     CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATTGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
EST: gi|211518399|gb|FL045665.1|FL045665
EST:     CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATTGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
EST: gi|93284067|gb|EB676331.1|EB676331
EST:     CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
EST: gi|211518406|gb|FL045672.1|FL045672
EST:     CCAGAG-CTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATTGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
EST: gi|76288143|gb|DV027711.1|DV027711
EST:     CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
EST: gi|149089237|gb|EE178440.2|EE178440
EST:     CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
EST: gi|78117346|gb|DV535733.1|DV535733
EST:     CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA
EST: gi|211518403|gb|FL045669.1|FL045669
EST:     CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCA                         TGTGGAGAGAATTTGTCTGGGGAGGAATTGCAGGTGCATTTGGGGAAGGCA
genomic: CCAGAGCCTGTCCCCCTCAGCGCCGTCTCCCCACCTCCCCAACTATTTCAgtaagtgccc ... tatggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCA