1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGGTTCGTTGCCCGTGTGGGTGGGCGCTATGGCGGCGATGGATGCCTCGGCAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtggattagattggattttatgggtgatcgatttgattgtggagtcgggattgatcgcactttcttttgctctgtgtgagtgccgcctgtgcaatattttttgtgtgtgtgcgaattccgtttctgatggcggtgcaagcgtgcag
species | Zea mays |
transcript | GRMZM2G094390_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|37422203|gb|CF648807.1|CF648807
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|211008716|gb|FL284228.1|FL284228
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|211011498|gb|FL284246.1|FL284246
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|211005952|gb|FL284225.1|FL284225
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|211005945|gb|FL284218.1|FL284218
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|211008725|gb|FL284237.1|FL284237
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAANAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|211008727|gb|FL284239.1|FL284239
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|89755431|gb|DY685850.1|DY685850
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|93282709|gb|EB674973.1|EB674973
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|101394873|gb|EB819371.1|EB819371
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|6578063|gb|AW244200.1|AW244200
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|211005949|gb|FL284222.1|FL284222
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|50326040|gb|CO521166.1|CO521166
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|211011496|gb|FL284244.1|FL284244
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|91868839|gb|EB400177.1|EB400177
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|211011493|gb|FL284241.1|FL284241
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|211005951|gb|FL284224.1|FL284224
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|211008718|gb|FL284230.1|FL284230
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAG ATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
genomic: CAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtgga ... aagcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTTCGTTGCCCGTGTGGGTGGGCGCTATGGCGGCGATGGATGCCTCGGCAGATAAGAACGCCGTCTTCCGCAAGCTTCGCGCCAAATCGGACAACAAGgtactgtggattagattggattttatgggtgatcgatttgattgtggagtcgggattgatcgcactttcttttgctctgtgtgagtgccgcctgtgcaatattttttgtgtgtgtgcgaattccgtttctgatggcggtgcaagcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT