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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTTCTCTCTGCCTTTCTAAAAGTGCGGCGACTGGTTGGGCTGCCGCCGACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaaaatgagttcccaaactctaatctcaaactatttggctgtttgatcgatgcctgttagcttctaagttttttgcaaaaaaatatcgggtgtacatgcctttgctagatcccaccctaactgttggtgtggtgcag

Basic information

species Zea mays
transcript GRMZM2G093050_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211266092|gb|FL146493.1|FL146493
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211268537|gb|FL146516.1|FL146516
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211266097|gb|FL146498.1|FL146498
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211268536|gb|FL146515.1|FL146515
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211268531|gb|FL146510.1|FL146510
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|67019799|gb|CO448548.1|CO448548
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211266096|gb|FL146497.1|FL146497
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211268529|gb|FL146508.1|FL146508
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211268530|gb|FL146509.1|FL146509
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211266100|gb|FL146501.1|FL146501
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAGGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211268535|gb|FL146514.1|FL146514
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211263664|gb|FL146490.1|FL146490
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211266101|gb|FL146502.1|FL146502
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211266093|gb|FL146494.1|FL146494
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|148930736|gb|EC873025.2|EC873025
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211268533|gb|FL146512.1|FL146512
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211266105|gb|FL146506.1|FL146506
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAGGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211266099|gb|FL146500.1|FL146500
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211266094|gb|FL146495.1|FL146495
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211268539|gb|FL146518.1|FL146518
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|149076177|gb|EE164770.2|EE164770
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211268534|gb|FL146513.1|FL146513
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|101389305|gb|EB816607.1|EB816607
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
EST: gi|211263666|gb|FL146492.1|FL146492
EST:     GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAG                         GAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG
genomic: GACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaa ... tgtggtgcagGAGAAGGAGTAGATCGTCGACCCAGAACCCTCGCTGATGGCGACTTTCGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGTTCTCTCTGCCTTTCTAAAAGTGCGGCGACTGGTTGGGCTGCCGCCGACTGCCGGGGCCTTCGCCGACCTCTTCGCCGGCGAAGAGGTCCCATCAGgtattgccaaaatgagttcccaaactctaatctcaaactatttggctgtttgatcgatgcctgttagcttctaagttttttgcaaaaaaatatcgggtgtacatgcctttgctagatcccaccctaactgttggtgtggtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG