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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGAGATTCCCTCATGTTCCACCGGGTGGTGCTGCAGATTCTGAGGGAGATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCgtatgttgacacatattacttatttattatgcgtttctagacatttccatattggttcgcacttgcctacgtgccgacatgttaagttgctgtttgtagt...

Basic information

species Zea mays
transcript GRMZM2G092988_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092988_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g09460.1 (Oryza sativa), 5'ss of exon 2
TGCTGAGATTCCCTCATGTTCCACCGGGTGGTGCTGCAGATTCTGAGGGAGATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCgtatgttgacacatattacttatttattatgcgtttctagacatttccatattggttcgcacttgcctacgtg--ccgacatgttaagttgctgtttgtagt-
                                       |||||||||||||| |||||||||||| ||||||||||||||||  | |||||| | ||| |||||| ||  || |      | | |      | | |    ||||     ||    |||| ||||| ||  |    |||  |  |   |    | |||  || 
---------------------------------------ATTCTGAGGGAGATTGAGGGCGACCTGTCCGGGTTCAAGTGCGGCTTGGCGCATCTGTTCTgtatgtagatgcacacactcaactcaactcatgat-cggttcattcattcatca--tcgctcttgcttagatagctcgattttgttgttgatcgattgctgtg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37379268|gb|CF626373.1|CF626373
EST:     GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc
EST: gi|37379268|gb|CF626373.1|CF626373
EST:     GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc
EST: gi|37379268|gb|CF626373.1|CF626373
EST:     GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc
EST: gi|211194336|gb|FL162075.1|FL162075
EST:     GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc
EST: gi|211194336|gb|FL162075.1|FL162075
EST:     GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc
EST: gi|211194336|gb|FL162075.1|FL162075
EST:     GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc
EST: gi|211191945|gb|FL162071.1|FL162071
EST:     GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc
EST: gi|211191945|gb|FL162071.1|FL162071
EST:     GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc
EST: gi|211191945|gb|FL162071.1|FL162071
EST:     GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc
EST: gi|84977403|gb|DW475825.1|DW475825
EST:     AGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCATCCTTCAG                         CACACAAGCGCATCGCTGACCATCAACGAGAACTATGACTCTGATGTGCA
genomic: AGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCA-TT--T-CTTC-Cgtatgttgac ... tgcagttcagCACACAAGCGCATCGCTGACCATCAACGAGAACTATGACTCTGATGTGCA
EST: gi|14245643|gb|BG874225.1|BG874225
EST:     GCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc
EST: gi|14245643|gb|BG874225.1|BG874225
EST:     GCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc
EST: gi|14245643|gb|BG874225.1|BG874225
EST:     GCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc
EST: gi|37381219|gb|CF627481.1|CF627481
EST:     GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc
EST: gi|37381219|gb|CF627481.1|CF627481
EST:     GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc
EST: gi|37381219|gb|CF627481.1|CF627481
EST:     GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc
EST: gi|211194338|gb|FL162077.1|FL162077
EST:     GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCC                         CACACAAGCGCATCGCTGACCATCAACGAGAACTATGACTCTGATGTGCAG
genomic: GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCgtatgttgac ... tgcagttcagCACACAAGCGCATCGCTGACCATCAACGAGAACTATGACTCTGATGTGCAG
EST: gi|211191948|gb|FL162074.1|FL162074
EST:     GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc
EST: gi|211191948|gb|FL162074.1|FL162074
EST:     GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc
EST: gi|211191948|gb|FL162074.1|FL162074
EST:     GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTTCCTTC                       
genomic: GATCGAGGGCGACCTGGCCGGGTTCAAGTGCGGTCTCGCGCATTTCTT-C--Cgtatgttgac ... tgcagttc