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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTGATGCAGGAAATCCAACCACTGGATCTACCTGAAATACTGGCAAATCTTGTAAGGCAGTCTGAACCATTTTTGGATCAACTTGGTGTACGGAGAGgtaaaaatcattaacaggcacctttatcctattttcttccatttatcaatagctgacccttgtatatattcatactgttcag

Basic information

species Zea mays
transcript GRMZM2G092588_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092588_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g33580.1 (Oryza sativa), 5'ss of exon 3
TGTTTGATGCAGGAAATCCAACCACTGGATCTACCTGAAATACTGGCAAATCTTGTAAGGCAGTCTGAACCATTTTTGGATCAACTTGGTGTACGGAGAGgtaaaaatcattaacaggcacctttatcctattttcttccatttatcaatagctgacccttgtatatattcatactgttcag------
            ||| | |  || || |||||  |||||||  |||||||||| || ||||| ||||  || |||||||||||||||||| || |||||||||   ||    || | ||| |  | |  |||||  |||||||||| |   | || ||||  |||||  |  |  |  |  |      
------------GAAGTTCCTCCTCTTGATCTGACTGAAATTATGGCAAATCTAGTTAGGCAATCTGGGCCCTTTTTGGATCAACTTGGTCTAAGGAGAGgtatgcat----aaaaagcaacactgttgtatttcattccatttattaggtgatggccctcttatatgctattggtactatggtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32810315|gb|CD962549.1|CD962549
EST:     TCTTGTAAGGCAGTCTGAACCATTTTTGGATCAACTTGGTGTACGGAGAG                         ATCAGTGTGACAAACTAGTGGAGGCATTGTGTAGGAAACAAAATCATTCCC
genomic: TCTTGTAAGGCAGTCTGAACCATTTTTGGATCAACTTGGTGTACGGAGAGgtaaaaatca ... tactgttcagATCAGTGTGACAAACTAGTGGAGGCATTGTGTAGGAAACAAAATCATTCCC
EST: gi|32823218|gb|CD962940.1|CD962940
EST:     TCTTGTAAGGCAGTCTGAACCATCTTTGGATCAACTTGGTGTACGGAGAG                         ATCAGTGTGACAAACTAGTGGAGGCATTGTGTAGGAAACAAAATCATTCCC
genomic: TCTTGTAAGGCAGTCTGAACCATTTTTGGATCAACTTGGTGTACGGAGAGgtaaaaatca ... tactgttcagATCAGTGTGACAAACTAGTGGAGGCATTGTGTAGGAAACAAAATCATTCCC