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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGGCCACGCCGTCCAGTGCCTCCGGGTCCGTCGCCGCAGCTTCCGGCCGCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagtttcccttcgcgtcccctcgtcttctctgctctgcctccttccgtgtactgtgaagagatgctatctcgcgcaatgaattcttgacgctaata...

Basic information

species Zea mays
transcript GRMZM2G092497_T05
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78088679|gb|DV517072.1|DV517072
EST:     GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG                         CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: gi|78109829|gb|DV528245.1|DV528245
EST:     GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG                         CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: gi|28873635|gb|CB329598.1|CB329598
EST:     GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG                         CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: gi|211400336|gb|FL375597.1|FL375597
EST:     GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG                         CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACACGTGA
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACA-GTGA
EST: gi|211134850|gb|FL400322.1|FL400322
EST:     GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG                         CACTGGGTTAGCGACAGTGATMGGCAGTGATAACTTCGAATGGGACAGTGA
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGAT-GGCAGTGATAACTTCGAATGGGACAGTGA
EST: gi|71325873|gb|DR799620.1|DR799620
EST:     GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG                         CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: gi|76913046|gb|DV164985.1|DV164985
EST:     GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG                         CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: gi|91873568|gb|EB403525.1|EB403525
EST:     GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG                         CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: gi|71447185|gb|DR828235.1|DR828235
EST:     GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAA---TG                         CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: gi|74238865|gb|DT646779.1|DT646779
EST:     GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG                         CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: gi|149074707|gb|EE163131.2|EE163131
EST:     GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG                         CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: gi|89762158|gb|DY689885.1|DY689885
EST:     GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG                         CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAGGCCACGCCGTCCAGTGCCTCCGGGTCCGTCGCCGCAGCTTCCGGCCGCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagtttcccttcgcgtcccctcgtcttctctgctctgcctccttccgtgtactgtgaagagatgctatctcgcgcaatgaattcttgacgctaata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT