1 5' 3' | 2 5' 3' | 3 5' 3' |
CCTACTGGGGAAGTGGCGCGGGGAAGGCGAGGGCAGCTTCCCCACCATATCCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggccctctctacctgcgatgtttctctcgcgagaaaatcttcccttcggctgccaaattcttagagctttttctttggcttacggatcggcggtggtgggtggctgcag
species | Zea mays |
transcript | GRMZM2G092152_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTCC-TCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCGEST: gi|78021667|gb|DV490054.1|DV490054
genomic: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
EST: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCGEST: gi|60338639|gb|DN205612.1|DN205612
genomic: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
EST: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCGEST: gi|32909568|gb|CF014380.1|CF014380
genomic: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
EST: TACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCGEST: gi|211489357|gb|FL110823.1|FL110823
genomic: TACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
EST: CCTCCTTCCGGTAC-GCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCGEST: gi|9732493|gb|BE511245.1|BE511245
genomic: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
EST: TCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCGEST: gi|211489363|gb|FL110829.1|FL110829
genomic: TCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
EST: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCGEST: gi|211489356|gb|FL110822.1|FL110822
genomic: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
EST: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCGEST: gi|211486489|gb|FL110821.1|FL110821
genomic: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
EST: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCGEST: gi|211489365|gb|FL110831.1|FL110831
genomic: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
EST: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCGEST: gi|32909569|gb|CF014381.1|CF014381
genomic: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
EST: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCGEST: gi|17932025|gb|BM268985.1|BM268985
genomic: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
EST: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCGEST: gi|211489360|gb|FL110826.1|FL110826
genomic: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
EST: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCGEST: gi|211489362|gb|FL110828.1|FL110828
genomic: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
EST: CCTCCTTCCGGTAC-GCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCGEST: gi|9732494|gb|BE511246.1|BE511246
genomic: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
EST: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCGEST: gi|211489359|gb|FL110825.1|FL110825
genomic: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
EST: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCGEST: gi|14243770|gb|BG841433.2|BG841433
genomic: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
EST: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCGEST: gi|211489366|gb|FL110832.1|FL110832
genomic: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
EST: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAG CCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
genomic: CCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggcc ... gtggctgcagCCAGTGATCTCGTACACGCAGAAGACGTGGAAGACGGCGTCTGGCGAGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTACTGGGGAAGTGGCGCGGGGAAGGCGAGGGCAGCTTCCCCACCATATCCTCCTTCCGGTACGGCGAGGAGCTCCTCTTCTCGCATCATCCCTCCAAGgcgtgtggccctctctacctgcgatgtttctctcgcgagaaaatcttcccttcggctgccaaattcttagagctttttctttggcttacggatcggcggtggtgggtggctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC