1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCCTCTCTGCCGCGGTTCAGGTGCCAGGAGTGCCGCCGCGCCCTCGTCGTCGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCGgtacctgacctccccctccaccctcccttccctcctgtctctccctttgttttatctatctactatattctcctccattccccgaataaatcaattcctg...
species | Zea mays |
transcript | GRMZM2G092112_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCG GTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGGEST: gi|74242757|gb|DT650671.1|DT650671
genomic: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCGgtacctgacc ... atgtatgcagGTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGG
EST: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCG GTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGGEST: gi|211504089|gb|FL041158.1|FL041158
genomic: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCGgtacctgacc ... atgtatgcagGTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGG
EST: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCG GTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGGEST: gi|71317026|gb|DR795199.1|DR795199
genomic: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCGgtacctgacc ... atgtatgcagGTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGG
EST: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCG GTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGGEST: gi|149102308|gb|EE188181.2|EE188181
genomic: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCGgtacctgacc ... atgtatgcagGTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGG
EST: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCG GTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGGEST: gi|71764423|gb|DR962360.1|DR962360
genomic: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCGgtacctgacc ... atgtatgcagGTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGG
EST: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCG GTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGGEST: gi|149081324|gb|EE170439.2|EE170439
genomic: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCGgtacctgacc ... atgtatgcagGTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGG
EST: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCG GTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGGEST: gi|67028723|gb|CO457472.1|CO457472
genomic: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCGgtacctgacc ... atgtatgcagGTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGG
EST: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCG GTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGGEST: gi|78080993|gb|DV509405.1|DV509405
genomic: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCGgtacctgacc ... atgtatgcagGTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGG
EST: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCG GTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGGEST: gi|29947670|gb|CB816776.1|CB816776
genomic: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCGgtacctgacc ... atgtatgcagGTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGG
EST: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCG GTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGG
genomic: CGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCGgtacctgacc ... atgtatgcagGTAATCATGCATCTTCTGTTCAGGGCAGTGTTATGGGTGCAAGCAAGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTCTCTGCCGCGGTTCAGGTGCCAGGAGTGCCGCCGCGCCCTCGTCGTCGTCGGGGTCGAGTCCTACGCCGACAGACTGCCCGCACACGCCGCGCCCGgtacctgacctccccctccaccctcccttccctcctgtctctccctttgttttatctatctactatattctcctccattccccgaataaatcaattcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctcctcc