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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAAAACCCTAGGTCTCCTCCGTCCCCCGATCCATCGCCTTCATGGCCGCGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagcttcgccgctctcaggccgagatttcagcgggattctcccgtgttccagaagctgatctagtgtctatctgcgcgcgcag

Basic information

species Zea mays
transcript GRMZM2G091995_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71766908|gb|DR964845.1|DR964845
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|71768664|gb|DR966601.1|DR966601
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|37425130|gb|CF650301.1|CF650301
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|149078936|gb|EE167772.2|EE167772
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|50336246|gb|CO531372.1|CO531372
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|148964753|gb|EC906012.2|EC906012
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|94473274|gb|EB702232.1|EB702232
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211393824|gb|FK983472.1|FK983472
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211396446|gb|FK983487.1|FK983487
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|148956890|gb|EC902811.2|EC902811
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211396444|gb|FK983485.1|FK983485
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211396441|gb|FK983482.1|FK983482
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211393820|gb|FK983468.1|FK983468
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211393826|gb|FK983474.1|FK983474
EST:     GCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTNCTGCGCAAGTK                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: GCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGT-CTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|149047149|gb|EE048155.2|EE048155
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211393819|gb|FK983467.1|FK983467
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|148959103|gb|EE010585.2|EE010585
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211396445|gb|FK983486.1|FK983486
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211396437|gb|FK983478.1|FK983478
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|148957059|gb|EC903023.2|EC903023
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211396443|gb|FK983484.1|FK983484
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGTGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211393821|gb|FK983469.1|FK983469
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|91055356|gb|EB165774.1|EB165774
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211393825|gb|FK983473.1|FK983473
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG