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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCTCGCAATCCAGCCCCTCTGTCATGGCCAAGACGAAGCAAGGGAAGCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctgccagtccgtgctcttgatcgagcccgtcgcgtgctctagtctaaagatttgagctctgacgtctcttgttgctctgcgtgaaccgtgaag

Basic information

species Zea mays
transcript GRMZM2G091265_T05
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091265_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g21770.1 (Oryza sativa), 5'ss of exon 1
-------GTTTTCTCGCAATCCAGCCCCTCTGTCATGGCCAAGACGAAGCAAGGGAAGCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctgccagtccgtgctcttgatcgagcccgtcgcgtgctctagtctaaagatttgagctctgacgtctcttgttgctctgcgtgaaccgtgaag
       |||| ||| ||||||    ||||   |||||||||||| ||||| || |||  ||| |||||  |||| |||||||||||||||| |||| | |||||||||| |  | ||   || |   |||| ||     ||| |      |   ||||    | ||      ||| |  |  || || |  | ||| |        
CTCTAGGGTTTCCTCCCAATCC----CCTC---CATGGCCAAGACCAAGCAGGGCAAGAAGGACGTCGAATCCTACACCATCAAGGGCACCACCAAGATCGTCCGAGgtacgggccgcttctc-gctttcttcatt---tccggccaagatttgggtctctttagtttcttcatgagggtttgtggtggtg-gtgtggaag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211264339|gb|FL410550.1|FL410550
EST:     CATCAAGGGCACCAACAAGGTGGTCCGAG                         TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
genomic: CATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: gi|211292773|gb|FL412753.1|FL412753
EST:     CATCAAGGGCACCAACAAGGTGGTCCGAG                         TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
genomic: CATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: gi|9952858|gb|BE639441.1|BE639441
EST:     GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG                         TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: gi|50325986|gb|CO521112.1|CO521112
EST:     GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG                         TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: gi|148933222|gb|EC876874.2|EC876874
EST:     GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG                         TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: gi|211408410|gb|FK952129.1|FK952129
EST:     GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG                         TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: gi|211469231|gb|FL410779.1|FL410779
EST:     CATCAAGGGCACCAACAAGGTGGTCCGAG                         TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
genomic: CATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: gi|78091413|gb|DV519787.1|DV519787
EST:     GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG                         TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: gi|94476085|gb|EB705043.1|EB705043
EST:     GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG                         TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: gi|50325839|gb|CO520965.1|CO520965
EST:     GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG                         TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: gi|71434213|gb|DR815263.1|DR815263
EST:     GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG                         TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG