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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCTCGCAATCCAGCCCCTCTGTCATGGCCAAGACGAAGCAAGGGAAGCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctgccagtccgtgctcttgatcgagcccgtcgcgtgctctagtctaaagatttgagctctgacgtctcttgttgctctgcgtgaaccgtgaag

Basic information

species Zea mays
transcript GRMZM2G091265_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091265_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g21770.1 (Oryza sativa), 5'ss of exon 1
-------GTTTTCTCGCAATCCAGCCCCTCTGTCATGGCCAAGACGAAGCAAGGGAAGCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctgccagtccgtgctcttgatcgagcccgtcgcgtgctctagtctaaagatttgagctctgacgtctcttgttgctctgcgtgaaccgtgaag
       |||| ||| ||||||    ||||   |||||||||||| ||||| || |||  ||| |||||  |||| |||||||||||||||| |||| | |||||||||| |  | ||   || |   |||| ||     ||| |      |   ||||    | ||      ||| |  |  || || |  | ||| |        
CTCTAGGGTTTCCTCCCAATCC----CCTC---CATGGCCAAGACCAAGCAGGGCAAGAAGGACGTCGAATCCTACACCATCAAGGGCACCACCAAGATCGTCCGAGgtacgggccgcttctc-gctttcttcatt---tccggccaagatttgggtctctttagtttcttcatgagggtttgtggtggtg-gtgtggaag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211408410|gb|FK952129.1|FK952129
EST:     GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG                         TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: gi|78090599|gb|DV518973.1|DV518973
EST:     GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG                         TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: gi|211284140|gb|FL386644.1|FL386644
EST:     GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG                         TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: gi|211524397|gb|FL405461.1|FL405461
EST:     GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG                         TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG