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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGATCCGCAAGAGCCGCCGCGAGGAGAGCCTTCTCAAGAGGCGCCGCGAGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatacgccgctcgctccgctctctgttatttctgatttttcctttttctgttgcgatggtattctagcgttgtgattatgtcgcgattggacgag...

Basic information

species Zea mays
transcript GRMZM2G091119_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 1
GGAGATCCGCAAGAGCCGCCGCGAGGAGAGCCTTCTCAAGAGGCGCCGCGAGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGG---------GGGTCGAGAAGAAGgtgagca-tacgccgctcgctccgctctctgttatttctgatttttcctttttctgttgcgatggtattctagcgttgtgattatgtcgcgattggacgag-
         |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| | |||  |||| |         | ||||| ||||||||||| | ||  |  |||| | | | | |  |    ||     |  |||        | |||||    | |  | | |||     |   | ||       | 
---------CAAGAGCCGCCGCGAGGAGAGCCTCCTCAAGAAGCGCCGCGAGGGGCTCCAGGCCCAGGCCCCCGTCCCCGCCTCCGCCGCAACCGGCGTCGATAAGAAGgtgagtagtatactcctcgattcccccccgctcccctcc--cctcccctcccctgcctccgatgacgctatcccatcgtgtcctggatcccatattttaggt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211097395|gb|FL161930.1|FL161930
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211099883|gb|FL161954.1|FL161954
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|148930623|gb|EE285320.2|EE285320
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211097397|gb|FL161932.1|FL161932
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211094918|gb|FL161916.1|FL161916
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|149036989|gb|EE155227.2|EE155227
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|26457325|gb|CA828908.1|CA828908
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211097396|gb|FL161931.1|FL161931
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211089988|gb|FL161899.1|FL161899
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211099874|gb|FL161945.1|FL161945
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211092450|gb|FL161908.1|FL161908
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211092445|gb|FL161903.1|FL161903
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211094925|gb|FL161923.1|FL161923
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|22521415|gb|BU080226.1|BU080226
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211094923|gb|FL161921.1|FL161921
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211097403|gb|FL161938.1|FL161938
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211097405|gb|FL161940.1|FL161940
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211089987|gb|FL161898.1|FL161898
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211092453|gb|FL161911.1|FL161911
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211099881|gb|FL161952.1|FL161952
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211092447|gb|FL161905.1|FL161905
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|89252976|gb|DY624762.1|DY624762
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211097407|gb|FL161942.1|FL161942
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|149015249|gb|EE045043.2|EE045043
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211099875|gb|FL161946.1|FL161946
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211099885|gb|FL161956.1|FL161956
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211094919|gb|FL161917.1|FL161917
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|149067410|gb|EE286973.2|EE286973
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211092451|gb|FL161909.1|FL161909
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211097406|gb|FL161941.1|FL161941
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211092454|gb|FL161912.1|FL161912
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211094926|gb|FL161924.1|FL161924
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211099880|gb|FL161951.1|FL161951
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211092455|gb|FL161913.1|FL161913
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|148982771|gb|EE028594.2|EE028594
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211097400|gb|FL161935.1|FL161935
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|148931614|gb|EC874737.2|EC874737
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
EST: gi|211097401|gb|FL161936.1|FL161936
EST:     AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAG                         CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC
genomic: AGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 679

GGAGATCCGCAAGAGCCGCCGCGAGGAGAGCCTTCTCAAGAGGCGCCGCGAGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 192

GGAGATCCGCAAGAGCCGCCGCGAGGAGAGCCTTCTCAAGAGGCGCCGCGAGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 209

GGAGATCCGCAAGAGCCGCCGCGAGGAGAGCCTTCTCAAGAGGCGCCGCGAGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 210

GGAGATCCGCAAGAGCCGCCGCGAGGAGAGCCTTCTCAAGAGGCGCCGCGAGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatac ... aaattggtagCTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGATCCGCAAGAGCCGCCGCGAGGAGAGCCTTCTCAAGAGGCGCCGCGAGGGGCTCCAGGCCCAGGTCCCTGCCCCTCCCTCGGGGGTCGAGAAGAAGgtgagcatacgccgctcgctccgctctctgttatttctgatttttcctttttctgttgcgatggtattctagcgttgtgattatgtcgcgattggacgag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG