1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGAGGACAAGTCAGGCGAGAGCGAGGTGATCAACCCGCCAGAAGACGCTGGCGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCCTTTCCAAGgtgagctcttggcggtgatgtcatgtaacgctttttgtggctatcttctgcgtattggtaggaaatgaatcaaatgataccatctgcagttgtgctgattgtcatttcattcataatgcaactttag
species | Zea mays |
transcript | GRMZM2G090935_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCCTTTCCAAG GGGAATCAAAGCCATGGACCTAATGCTGTCAAATCAAAGAGCCCAACGAGTEST: gi|148966075|gb|EE017014.2|EE017014
genomic: GCGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCCTTTCCAAGgtgagctctt ... gcaactttagGGGAATCAAAGCCATGGACCTAATGCTGTCAAATCAAAGAGCCCAACGAGT
EST: GCGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCCTTTCCAAG GGGAATCAAAGCCATGGACCTAATGCTGTCAAATCAAAGAGCCCAACGAGTEST: gi|21432286|gb|BQ547776.1|BQ547776
genomic: GCGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCCTTTCCAAGgtgagctctt ... gcaactttagGGGAATCAAAGCCATGGACCTAATGCTGTCAAATCAAAGAGCCCAACGAGT
EST: GCGGGGAGGCCACATCACCCCTGGAAGGCAGGAAGCCTCGCCTTTCCAAG GGGAATCAAAGCCATGGACCTAATGCTGTCAAATCAAAGAGTCCAACGAGTEST: gi|37383092|gb|CF628527.1|CF628527
genomic: GCGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCCTTTCCAAGgtgagctctt ... gcaactttagGGGAATCAAAGCCATGGACCTAATGCTGTCAAATCAAAGAGCCCAACGAGT
EST: GCGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCCTTTCCAAG GGGAATCAAAGCCATGGACCTAATGCTGTCAAATCAAAGAGCCCAACGAGTEST: gi|21331503|gb|BQ486884.1|BQ486884
genomic: GCGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCCTTTCCAAGgtgagctctt ... gcaactttagGGGAATCAAAGCCATGGACCTAATGCTGTCAAATCAAAGAGCCCAACGAGT
EST: GCGGGGAGGCCACATCACCCCTGGAAGGCAGGAAGCCTCGCCTTTCCAAG GGGAATCAAAGCCATGGACCTAATGCTGTCAAATCAAAGAGTCCAACGAGTEST: gi|148964662|gb|EC905944.2|EC905944
genomic: GCGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCCTTTCCAAGgtgagctctt ... gcaactttagGGGAATCAAAGCCATGGACCTAATGCTGTCAAATCAAAGAGCCCAACGAGT
EST: GCGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCCTTTCCAAG GGGAATCAAAGCCATGGACCTAATGCTGTCAAATCAAAGAGCCCAACGAGTEST: gi|211254292|gb|FK945285.1|FK945285
genomic: GCGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCCTTTCCAAGgtgagctctt ... gcaactttagGGGAATCAAAGCCATGGACCTAATGCTGTCAAATCAAAGAGCCCAACGAGT
EST: GCGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCCTTTCCAAG GTGAAATCAA-GCCATGGACCTAATGCTGTCAAATCAAAGAGCCCAACGAGEST: gi|211254291|gb|FK945284.1|FK945284
genomic: GCGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCCTTTCCAAGgtgagctctt ... gcaactttagGGGAA-TCAAAGCCATGGACCTAATGCTGTCAAATCAAAGAGCCCAACGAG
EST: CGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCCCTTTC-AAG GGGAATCAAAGCCATGGACCTAATGCTGTCAAATCAAAGAGCCCAACGAGEST: gi|50333362|gb|CO528488.1|CO528488
genomic: CGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCC-TTTCCAAGgtgagctctt ... gcaactttagGGGAATCAAAGCCATGGACCTAATGCTGTCAAATCAAAGAGCCCAACGAG
EST: GCGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCCTTTCCAAG GGGAATCAAAGCCATGGACCTAATGCTGTCAAATCAAAGAGCCCAACGAGT
genomic: GCGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCCTTTCCAAGgtgagctctt ... gcaactttagGGGAATCAAAGCCATGGACCTAATGCTGTCAAATCAAAGAGCCCAACGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGGACAAGTCAGGCGAGAGCGAGGTGATCAACCCGCCAGAAGACGCTGGCGGGGAGGCCACCTCACCCCTGGAAGGGTTGAAGCCTCGCCTTTCCAAGgtgagctcttggcggtgatgtcatgtaacgctttttgtggctatcttctgcgtattggtaggaaatgaatcaaatgataccatctgcagttgtgctgattgtcatttcattcataatgcaactttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC