1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAACCCTTCTGTCCTCCCTTCGCCCGGTCCACCCTCTCGCGGCCGCCAGGAGAAGCCGCCGCCACAGCAGGCGACAAAGATGgtaagatccacaaacctttctctttgttcgtgcttctccagtggattgctgcgaagtggggggcgtctaggcaagcctttttcggggtagggcgtcctcg...
species | Zea mays |
transcript | GRMZM2G090738_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGAGAAGCCGCCGCCACAGCAGGCGACAAAGATN NNNNNNTTCGTCAAGACCCAGAAGACCAATGCGTACTTCAAGCGTTTCCAAEST: gi|211279085|gb|FL069191.1|FL069191
genomic: AGGAGAAGCCGCCGCCACAGCAGGCGACAAAGATGgtaagatcca ... gtttctccagGGGGGGTTCGTCAAGACCCAGAAGACCAATGCGTACTTCAAGCGTTTCCAA
EST: CCTCTCGCGGCCGCCA-GAGAAGCCGCCGCCACAGCAGGCGACAAAGATN NNNNNNTTCGTCAAGACCCAGAAGACCAATGCGTACTTCAAGCGTTTCCAAEST: gi|211279081|gb|FL069187.1|FL069187
genomic: CCTCTCGCGGCCGCCAGGAGAAGCCGCCGCCACAGCAGGCGACAAAGATGgtaagatcca ... gtttctccagGGGGGGTTCGTCAAGACCCAGAAGACCAATGCGTACTTCAAGCGTTTCCAA
EST: CCTCTCGCGGCCGCCAGGAGAAGCCGCCGCCACAGCAGGCGACAAAGATN NNNNNNTTCGTCAAGACCCAGAAGACCAATGCGTACTTCAAGCGTTTCCAAEST: gi|60672209|gb|DN474977.1|DN474977
genomic: CCTCTCGCGGCCGCCAGGAGAAGCCGCCGCCACAGCAGGCGACAAAGATGgtaagatcca ... gtttctccagGGGGGGTTCGTCAAGACCCAGAAGACCAATGCGTACTTCAAGCGTTTCCAA
EST: GCGGCCGCCAGGAGAAGCCGCCGCCACAGCAGGCGACAAAGATN NNNNNNTTCGTCAAGACCCAGAAGACCAATGCGTACTTCAAGCGTTTCCAA
genomic: GCGGCCGCCAGGAGAAGCCGCCGCCACAGCAGGCGACAAAGATGgtaagatcca ... gtttctccagGGGGGGTTCGTCAAGACCCAGAAGACCAATGCGTACTTCAAGCGTTTCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACCCTTCTGTCCTCCCTTCGCCCGGTCCACCCTCTCGCGGCCGCCAGGAGAAGCCGCCGCCACAGCAGGCGACAAAGATGgtaagatccacaaacctttctctttgttcgtgcttctccagtggattgctgcgaagtggggggcgtctaggcaagcctttttcggggtagggcgtcctcg
- - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG