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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTAAAGAGAAGTTTCAGCTGCTGCAGAAGGTTATATCCATTCTTGGAGATGCAGAGAAAAGAGCGTTTATATGATGATACTGGCATCACTGATGATgtgcgcaccttatttatagcactccaattctacctttcagattcaagcattattttatgaatcttcctttttcatctag

Basic information

species Zea mays
transcript GRMZM2G090689_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G090689_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g10220.1 (Oryza sativa), 5'ss of exon 3
GAAGCTAAAGAGAAGTTTCAGCTGCTGCAGAAGGTTATATCCATTCTTGGAGATGCAGAGAAAAGAGCGTTTATATGATGATACTGGCATCACTGATGATg---tgcgcaccttatttatagcactccaatt-ctacctttcagattcaagcattattttatgaatcttcctttttcatctag
  ||| || ||||| ||||||| ||| |||||||| ||||| |||||||| ||||  |||||||| || || ||||||||| ||||| ||  |||||||||   || |||||| |||   || | |   ||| | | | ||    | | || |   |||    | | ||   ||||| | |||
--AGCCAAGGAGAAATTTCAGCAGCTTCAGAAGGTGATATCTATTCTTGGGGATGAGGAGAAAAGGGCATT-ATATGATGAGACTGGAATTGCTGATGATGATgtgagcacctgattccaagtagtgtgatttccaacctttcactcccagtagattttctgaagttttgtcttttcctgtag

upper sequence: GRMZM2G090689_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT3G12170.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAGCTAAAGAGAAGTTTCAGCTGCTGCAGAAGGTTATATCCATTCTTGGAGATGCAGAGAAAAGAGCGTTTATATGATGATACTGGCATCACTGATGATgtgcgcaccttatttatagcactccaattctacctttcagattcaagcattattttatgaatc--ttcctttttcatctag----
   ||||||||||| ||||||| | |||| |||||||| || ||||| || |||| ||||||||||||  |  |||||| | ||||||     ||||||||   | |  ||      |    | ||| |  |        | |  || ||| | |||  ||    ||  ||    ||||      
--TGCTAAAGAGAAATTTCAGCAGTTGCAAAAGGTTATTTCGATTCTCGGTGATGAAGAGAAAAGAGCAGTC-TATGATCAAACTGGCTCAGTTGATGATGC-Tgtaagttgaaagaaagttttcaacttaagtaaaggtactggaggattttcttacaaactggttatttccctatctcattag