1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTGCCCGCGCGTTCCCGTGCGGCAACTGGCCGCCGCCGCCGCACTACGCCAGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgcccttctcttcccatcctaccgtgcgagacccagcacacgaaccctaacttaagctatttggctatttgcatccggatctgatctaattaccagtgtgtgcatgcctactaacttggattttttctggggaaaaatattcttgggacacccctgtcctttactgggctctcccctacag
species | Zea mays |
transcript | GRMZM2G089630_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGWAGCAAGEST: gi|24462536|gb|BM660067.1|BM660067
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|148965218|gb|EE016025.2|EE016025
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|211127243|gb|FL371391.1|FL371391
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|211219466|gb|FL394123.1|FL394123
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG AAAACTGGACTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|211212172|gb|FL397455.1|FL397455
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|211148954|gb|FL408689.1|FL408689
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|211059840|gb|FL382528.1|FL382528
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG AAAACTGGACTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|211163062|gb|FL403922.1|FL403922
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|211125396|gb|FL373706.1|FL373706
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG AAAACTGGACTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|211395001|gb|FL377443.1|FL377443
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG AAAACTGGACTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|211269202|gb|FL409758.1|FL409758
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|211421251|gb|FL404519.1|FL404519
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|211439743|gb|FL418515.1|FL418515
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|211231674|gb|FL380035.1|FL380035
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|211176599|gb|FL421415.1|FL421415
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG AAAACTGGACTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|148931222|gb|EC873991.2|EC873991
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|211030447|gb|FL427837.1|FL427837
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG AAAACTGGACTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|211403472|gb|FL414959.1|FL414959
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAGEST: gi|211421497|gb|FL416796.1|FL416796
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCCCGCGCGTTCCCGTGCGGCAACTGGCCGCCGCCGCCGCACTACGCCAGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgcccttctcttcccatcctaccgtgcgagacccagcacacgaaccctaacttaagctatttggctatttgcatccggatctgatctaattaccagtgtgtgcatgcctactaacttggattttttctggggaaaaatattcttgggacacccctgtcctttactgggctctcccctacag
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