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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCCGCGCGTTCCCGTGCGGCAACTGGCCGCCGCCGCCGCACTACGCCAGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgcccttctcttcccatcctaccgtgcgagacccagcacacgaaccctaacttaagctatttggctatttgcatccggatctgatctaattaccagtgtgtgcatgcctactaacttggattttttctggggaaaaatattcttgggacacccctgtcctttactgggctctcccctacag

Basic information

species Zea mays
transcript GRMZM2G089630_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211182574|gb|FL404769.1|FL404769
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGWAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|24462536|gb|BM660067.1|BM660067
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|211127243|gb|FL371391.1|FL371391
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|148969061|gb|EE019781.2|EE019781
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|211219466|gb|FL394123.1|FL394123
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG                         AAAACTGGACTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|149088966|gb|EE178110.2|EE178110
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|211212172|gb|FL397455.1|FL397455
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|50326262|gb|CO521388.1|CO521388
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|211148954|gb|FL408689.1|FL408689
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|32919453|gb|CF024265.1|CF024265
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|211059840|gb|FL382528.1|FL382528
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG                         AAAACTGGACTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|211163062|gb|FL403922.1|FL403922
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|211125396|gb|FL373706.1|FL373706
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG                         AAAACTGGACTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|211395001|gb|FL377443.1|FL377443
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG                         AAAACTGGACTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|211269202|gb|FL409758.1|FL409758
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|37421524|gb|CF648462.1|CF648462
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|211421251|gb|FL404519.1|FL404519
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|211231674|gb|FL380035.1|FL380035
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|71436369|gb|DR817419.1|DR817419
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|211176599|gb|FL421415.1|FL421415
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG                         AAAACTGGACTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|148931222|gb|EC873991.2|EC873991
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|211030447|gb|FL427837.1|FL427837
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG                         AAAACTGGACTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|211403472|gb|FL414959.1|FL414959
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|211421497|gb|FL416796.1|FL416796
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|211439743|gb|FL418515.1|FL418515
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACTCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
EST: gi|149090129|gb|EE179428.2|EE179428
EST:     AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAG                         AAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG
genomic: AGGTGCCCAATTCCTCGTCGGGTCCTCCGCCGGCGACGAGCACCCACCAGgtacgccctt ... tcccctacagAAAACTGGAGTGGACTCTACATGTCAAGACAGTATGGCGCCAGGAAGCAAG