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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAACGGATTCCCCTCCCCTCGAGAGATCCGACCCTTGGCCCGGTCGCTGGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctgccaaactctctctctctctctctctctctcgtcatcttccctcgccccttccgctccaatgcattcatttcgcagaaatccttcccgccc...

Basic information

species Zea mays
transcript GRMZM2G089454_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G089454_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g49980.2 (Oryza sativa), 5'ss of exon 1
AGCAACGGATTCCCCTCCCCTCGAGAGATCCGACCCTTGGCCCGGTCGCTGGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtc-cgtgctgccaaactctctctctctctctctctctctcgtcatcttccctcgccccttccgctccaatgcattcatttcgcagaaatccttcccgccc
||   |||   |  ||  |  |||  |   | |||     | |     | | || || |||||||||||||||||| ||||||||||||||||| || ||||| |   | |||   ||||||| ||   ||| | |  | | || |    |   |  |  |||  ||    |     |  |||   |  |  |||  |   
AGATCCGGGCGCGGCTGGCGGCGACGGTCACCACCACCACCACCCCGACGGCGGCGAACGGCATGGGGCTCTGGGACTCGCTCCTCAACTGGCTCCGAAGgtctccccccgcctcgctctctcccttcttcttttttccgcttcgtgcatctcagttcagtcccttctgtggggacgagatcgtccatgtgtttcgggtt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211065338|gb|FL151744.1|FL151744
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211065340|gb|FL151746.1|FL151746
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211065346|gb|FL151752.1|FL151752
EST:     GGGGAGAGCGG---GGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211065347|gb|FL151753.1|FL151753
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211078877|gb|FL255316.1|FL255316
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211518201|gb|FL151739.1|FL151739
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGA-                         CGTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATG
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagC-TTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATG
EST: gi|211210689|gb|FL096715.1|FL096715
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAS                         -TTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGCTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211073404|gb|FL255297.1|FL255297
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211518202|gb|FL151740.1|FL151740
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211518193|gb|FL151731.1|FL151731
EST:     GGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGACG                         -TTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATG
genomic: GGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGA-Ggtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATG
EST: gi|211518192|gb|FL151730.1|FL151730
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAS                         STTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211078878|gb|FL255317.1|FL255317
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211518204|gb|FL151742.1|FL151742
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211518190|gb|FL151728.1|FL151728
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211518196|gb|FL151734.1|FL151734
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211068105|gb|FL151761.1|FL151761
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGA-                         STTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211518199|gb|FL151737.1|FL151737
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211065349|gb|FL151755.1|FL151755
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211068106|gb|FL151762.1|FL151762
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCMAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211076131|gb|FL255301.1|FL255301
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211065345|gb|FL151751.1|FL151751
EST:     GGGGAGAGCGG---GGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211518200|gb|FL151738.1|FL151738
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211065350|gb|FL151756.1|FL151756
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211518197|gb|FL151735.1|FL151735
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAS                         STTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211518203|gb|FL151741.1|FL151741
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211078881|gb|FL255320.1|FL255320
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211065343|gb|FL151749.1|FL151749
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211065342|gb|FL151748.1|FL151748
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211065351|gb|FL151757.1|FL151757
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211065341|gb|FL151747.1|FL151747
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCAGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211065344|gb|FL151750.1|FL151750
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCAGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211068102|gb|FL151758.1|FL151758
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211065339|gb|FL151745.1|FL151745
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211068103|gb|FL151759.1|FL151759
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211068104|gb|FL151760.1|FL151760
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211518195|gb|FL151733.1|FL151733
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211518194|gb|FL151732.1|FL151732
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|58029961|gb|CX725388.1|CX725388
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
EST: gi|211065348|gb|FL151754.1|FL151754
EST:     GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAG                         CTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC
genomic: GGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 33 (upstream exon), 49 (downstream exon)
Score: 15

AGCAACGGATTCCCCTCCCCTCGAGAGATCCGACCCTTGGCCCGGTCGCTGGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGCTGGGAAGACATCGCTGGTCAATGCTGTTGCT


Block sizes: 31 (upstream exon), 19 (downstream exon)
Score: 1

AGCAACGGATTCCCCTCCCCTCGAGAGATCCGACCCTTGGCCCGGTCGCTGGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGCTGGGAAGACATCGCTGGTCAATGCTGTTGCT


Block sizes: 24 (upstream exon), 26 (downstream exon)
Score: 1

AGCAACGGATTCCCCTCCCCTCGAGAGATCCGACCCTTGGCCCGGTCGCTGGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctg ... tctatttcagCTTGTTTTTTAAGCAAGAAATGGAACTCTCCCTGGTTGGGTTGCAGAATGCTGGGAAGACATCGCTGGTCAATGCTGTTGCT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCAACGGATTCCCCTCCCCTCGAGAGATCCGACCCTTGGCCCGGTCGCTGGGGAGAGCGGCATGGGGCTCTGGGATTCGCTCCTCAACTGGCTGCGGAGgtccgtgctgccaaactctctctctctctctctctctctcgtcatcttccctcgccccttccgctccaatgcattcatttcgcagaaatccttcccgccc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccgcc