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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGCACAGGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTTGCGTCCTCCGCGCCCCTGGGCTGTCGACGGCTGCGACAAGgtcagttctttgttagccctggttctttttctctccatcttttgtttaggtattttatggctcggtagaaaactctttcaagcttaccttgctttatgga...

Basic information

species Zea mays
transcript GRMZM2G089317_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|45568454|gb|CK986072.1|CK986072
EST:     CAGCCTTGTTGCGTCCTCCGCGCCCCTGGGCCGTCGACGGCTGCGGCAAG                         TGGTTCAAGCTGTTGCCAATCCAGACCCTGCGATCGAGCTTCCATTGACTG
genomic: CAGGCTTGTTGCGTCCTCCGCGCCCCTGGGCTGTCGACGGCTGCGACAAGgtcagttctt ... gctctagcagTGGTTCAAGCTGTTGCCAATCCAGACCCTGCGATCGAGCTTCCATTGACTG
EST: gi|211258469|gb|FL134883.1|FL134883
EST:     CTGGGCTGTCGACGGCTGCGACAAG                         TGGTTCAAGCTGTTGCCAATCCAGACCCTGCGATCGAGCTTCCATTGACTG
genomic: CTGGGCTGTCGACGGCTGCGACAAGgtcagttctt ... gctctagcagTGGTTCAAGCTGTTGCCAATCCAGACCCTGCGATCGAGCTTCCATTGACTG
EST: gi|76290647|gb|DV030215.1|DV030215
EST:     AGGCTTGTTGCGTCCTCCGCGCCCCCTGGGCTGTGGACGGCTGCGACAAG                         TGGTTCAAGCTGTTGCCAATCCAGACCCTGCGATCGAGCTTCCATTGACTG
genomic: AGGCTTGTTGCGTCCTCCGCG-CCCCTGGGCTGTCGACGGCTGCGACAAGgtcagttctt ... gctctagcagTGGTTCAAGCTGTTGCCAATCCAGACCCTGCGATCGAGCTTCCATTGACTG