Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTCTCCAGCGATGCAGACGACGGCGGCGGCGGCTGTGGCATGGGCGCCTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttccgttaccccctgtggcttttctcgaggggccttttctcgcctggctcggtccggctgattggttctcgattcggtgcacag

Basic information

species Zea mays
transcript GRMZM2G089317_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G089317_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g07916.1 (Oryza sativa), 5'ss of exon 1
--CTCTTCTCCAG-CGATGCAGACGACGGCGGCGGCGGCTGTGGCATGGGCGCCTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttccg-----ttaccccctgtggcttttctcgaggggccttttctcgcctggctcggtccggctgattggttctcgattcggtgcacag------
   | || |  || ||||||||||| ||||||||||||| ||||| ||||||||  |||||||| ||||||||||  || | || |||||| || |||||| ||| |||||| ||     || |    ||| | ||     | ||  ||   | || | ||| || | |  |||||   ||||| |||| || |   |       
TTTTGTTGTAGAGGCGATGCAGACGGCGGCGGCGGCGGCGGTGGCGTGGGCGCCGAGCCCATCGCCGTCCACCTC--CACC-TCATCGCCGCCCCCCTTCAAGgttagggttacgcctttttgctgtttgttgtttcagggggggaacccgatttc-cttggttctgccaagctgacgagttcttgatttggggtttatttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148943917|gb|EC888997.2|EC888997
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211314414|gb|FL115083.1|FL115083
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|26560055|gb|CA832290.1|CA832290
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTCTTCCGCGCCCCAGCCTTGT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCG-CCCAGGCTTGT
EST: gi|211310361|gb|FL115055.1|FL115055
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211314413|gb|FL115082.1|FL115082
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTCGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|78092999|gb|DV521373.1|DV521373
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211310364|gb|FL115058.1|FL115058
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTCTTCCGCGCCCAGCCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|23199609|gb|BU582174.1|BU582174
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTCTTCCGCGCCCAGCCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211312389|gb|FL115071.1|FL115071
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTCTTCCGCGCCCAGCCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211314415|gb|FL115084.1|FL115084
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211310367|gb|FL115061.1|FL115061
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GT-GGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211310368|gb|FL115062.1|FL115062
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GT-GGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211314419|gb|FL115088.1|FL115088
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTCTTCCGCGCCCAGCCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211312387|gb|FL115069.1|FL115069
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GT-GGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211312386|gb|FL115068.1|FL115068
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTCTTCCGCGCCCAGCCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211312391|gb|FL115073.1|FL115073
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211314418|gb|FL115087.1|FL115087
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|76290648|gb|DV030216.1|DV030216
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211312381|gb|FL115063.1|FL115063
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTCTTCCGCGCCCAGCCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211314411|gb|FL115080.1|FL115080
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTCTTCCGCGCCCAGCCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|67017852|gb|CO446601.1|CO446601
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTCTTCCGCGCCCAGCCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211312394|gb|FL115076.1|FL115076
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211312382|gb|FL115064.1|FL115064
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTCTTCCGCGCCCAGCCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211310362|gb|FL115056.1|FL115056
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GT-GGGGTTGCGTCGACGGCCGTGCGGGCTTCTTCCGCGCCCAGCCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211312388|gb|FL115070.1|FL115070
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211312390|gb|FL115072.1|FL115072
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|45568454|gb|CK986072.1|CK986072
EST:     TCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTCTTCCGCGCCCAGCCTTGTT
genomic: TCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|148991275|gb|EE032745.2|EE032745
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|71433911|gb|DR814961.1|DR814961
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211312383|gb|FL115065.1|FL115065
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211314410|gb|FL115079.1|FL115079
EST:     CTTGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTCTTCCGCGCCCAGCCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211314417|gb|FL115086.1|FL115086
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|78105215|gb|DV523633.1|DV523633
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211314409|gb|FL115078.1|FL115078
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGR                         GTGGGGGTTGCGTCGACGAGCCGTGCGGRCTTGTTCCGCGCCCAGGCTTGT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACG-GCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGT
EST: gi|211312395|gb|FL115077.1|FL115077
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GT-GGGGTTGCGTCGACGGCCGTGCGGGCTTCTTCCGCGCCCAGCCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|148954266|gb|EC899670.2|EC899670
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|29543552|gb|CB603934.1|CB603934
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211312384|gb|FL115066.1|FL115066
EST:     CTGGCCCATCGGCGTCCWNCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GT-GGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|148950763|gb|EC896363.2|EC896363
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211312393|gb|FL115075.1|FL115075
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GT-GGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|50324425|gb|CO519551.1|CO519551
EST:     CTGGCCCATCGGCGTCCACCTCCTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|149103365|gb|EE288750.2|EE288750
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT
EST: gi|211310363|gb|FL115057.1|FL115057
EST:     CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGG                         GT-GGGGTTGCGTCGACGGCCGTGCGGGCTTCTTCCGCGCCCAGCCTTGTT
genomic: CTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 46 (downstream exon)
Score: 16

CTCTTCTCCAGCGATGCAGACGACGGCGGCGGCGGCTGTGGCATGGGCGCCTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTTGCGTCCTCCGCGCCCCTGGGCTGTCGACGGCTGCGACAAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 38

CTCTTCTCCAGCGATGCAGACGACGGCGGCGGCGGCTGTGGCATGGGCGCCTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTTGCGTCCTCCGCGCCCCTGGGCTGTCGACGGCTGCGACAAG


Block sizes: 44 (upstream exon), 37 (downstream exon)
Score: 9

CTCTTCTCCAGCGATGCAGACGACGGCGGCGGCGGCTGTGGCATGGGCGCCTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTTGCGTCCTCCGCGCCCCTGGGCTGTCGACGGCTGCGACAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 38

CTCTTCTCCAGCGATGCAGACGACGGCGGCGGCGGCTGTGGCATGGGCGCCTGGCCCATCGGCGTCCACCTCGTCATCGTCCTCGCCGTCCACCTTCAGGgtaagggttc ... cggtgcacagGTGGGGGTTGCGTCGACGGCCGTGCGGGCTTGTTCCGCGCCCAGGCTTGTTGCGTCCTCCGCGCCCCTGGGCTGTCGACGGCTGCGACAAG