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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTACTGAGTCTTCTGTCACCCTAGATGGGACTGCGGCATGTTTATGCTCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgttgtctatcatttttcccataatggatatgatgtatctgcaaaagttgaaacaaaattgtatgcattttgtag

Basic information

species Zea mays
transcript GRMZM2G088653_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G088653_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g25370.1 (Oryza sativa), 5'ss of exon 8
AATGTACTGAGTCTTCTGTCACCCTAGATGGGACTGCGGCATGTTTATGCTCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgttgtctatcatttttcccat-aatggatatgatgtatctgcaa-aagttgaaacaaaattgtatgcattttgtag------------------------------------------
                            ||||| || |||||||| |||||||||||||| || ||||||||||||||||||| ||| | ||| |||||||||  |  |||  | |     ||||    |||  ||||| | ||  || || ||||| |||   |||| ||||  |||| |                                            
---------------------------GTGGGATTGTGGCATGTTCATGCTCAAATACATAGATTTCTACAGCAGAGATATGGGCCTTACTTTTGGACAGgtaccaaattggatcttgcgcttcctgccaatttatatgctctacttggaagaagttaaaatggaatt-tatgatttttttttcaagtgaaattaactggttttgaaattggttgtctttcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5455863|gb|AI833553.1|AI833553
EST:     TTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG                         AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
genomic: TTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST: gi|12971305|gb|BG267416.1|BG267416
EST:     TCAAATCCATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG                         AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST: gi|37388193|gb|CF631303.1|CF631303
EST:     TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG                         AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST: gi|86471498|gb|DY237868.1|DY237868
EST:     AATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG                         AAGCAAATGCATTATTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
genomic: AATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST: gi|78091524|gb|DV519898.1|DV519898
EST:     TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG                         AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST: gi|22542666|gb|BU093104.1|BU093104
EST:     TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG                         AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG