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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgccttcgcacttggccttggtttagctaagccttggaggccgcgcggagcgcggacggatggtgaccgccggtgacggcaatgctgcaacgggcaataatgcag

Basic information

species Zea mays
transcript GRMZM2G088242_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G088242_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g28200.1 (Oryza sativa), 5'ss of exon 1
CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgc-cttcgcacttggccttggtttagctaagccttggaggccgcgcggagcgcggacggatggtgaccgccggtgacggcaatgctgcaacgggcaataatgcag
|||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||| ||||||||||| ||     |  |   |     | |  | ||| |  |   |   |  ||    ||  |||      |   |||     ||    ||||||| |                  
CTTCGTCGTGTGGCGGCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCGTCGTTCGTCCGCCAGCTCAACACCTACgtaagcaaagcgccatgccgccaccttctgtagttctgttctctcgtgcgttttga-tgcgtgtaagtaacgac-----gtcgttgcaatgcag------------------

upper sequence: GRMZM2G088242_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA06G04390.1 (Glycine max), 5'ss of exon 1
CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgccttcgcacttggccttggtttagctaagccttggaggccgcgcggagcgcggacggatggtgaccgccggtgacggcaatgctgcaacgggcaataatgcag
|||||| || ||||| || || ||||||||  | ||| | || || ||||||||||| ||||||||||||||   ||||||||| ||||| |||||||| ||   |    ||| |       ||   | ||| |   |  |             | |  ||    ||  | |  ||  |     |                          
CTTCGTCGTTTGGCGTCCTCCTGAGTTCGCAAGAGACCTTCTTCCTAACTACTTCAAACACAACAACTTCTCAAGCTTCGTTCGCCAGCTCAACACCTATgta--ttatattcacttacacactatatctagttcttcagttattcttataattaacatggtta-attttaaatgcatgaattag--------------------------

upper sequence: GRMZM2G088242_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA04G04200.1 (Glycine max), 5'ss of exon 1
CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgccttcgcacttggccttggtttagctaagccttggaggccgcgcggagcgcggacggatggtgaccgccggtgacggcaatgctgcaacgggcaataatgcag
|||||| || ||||| || || || |||||  | ||| | || || ||||||||||| |||||||||||||||  ||||||||| || || |||||||| ||   |    ||   ||||   |   | |   |||   || |       |    |     |     |  |         |   | || |  |  || ||   |    |   
CTTCGTCGTTTGGCGTCCTCCTGAATTCGCCAGAGACCTTCTTCCTAACTACTTCAAACACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATgta--ttatatt--tacttacacactgatacactatctctag-----ttcttcaattattgttttcttttctttttatattctgacagtttta-aatggatgaactag---

upper sequence: GRMZM2G088242_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA17G35980.1 (Glycine max), 5'ss of exon 1
CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgccttcgcacttggccttggtttagctaagccttggaggccgcgcggagcgcggacggatggtgaccgccggtgacggcaatgctgcaacgggcaataatgcag
|||||| || ||| | || || || |||||  | ||| | ||||||||||| ||||| |||||||||||||||  ||||||||| || || |||||||| ||  ||  | | | | | |    |   | |  ||    |||     |  | |  | ||         |   | |     | |   || |  || |||    |||       
CTTCGTCGTTTGGAGACCCCCCGAATTCGCTAGGGACCTTCTCCCCAACTATTTCAAACACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATgtatgtatcatacacccatcatgtctctctt-ctttttcttaatttctactcata-cgttcttccgagacaatc-ttattcaatacatta-tgaaacactaaat-------

upper sequence: GRMZM2G088242_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA14G09190.1 (Glycine max), 5'ss of exon 1
CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgccttcgcacttggccttggt-ttagctaagccttggaggccgcgcggagcgcggacggatggtgaccgccggtgacggcaatgctgcaacgggcaataatgcag
|||||| || ||| | || || ||||||||  | ||| | ||||||||||| ||||| |||||||||||||||  ||||||||| || || |||||||| ||  ||  |   | | | |    |   | ||   |    |||            |  |    |  || ||  | |     ||   | ||   |    |   |||||      
CTTCGTCGTTTGGAGACCCCCCGAGTTCGCTAGGGACCTTCTCCCCAACTATTTCAAACACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATgtatgtatcacacacccatcatatctctcttctttttttcttttttttttttaagttcttttatcgaaggcaatca----tgtttgaaacattat--caatcaata------

upper sequence: GRMZM2G088242_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv18s0001g10380.t01 (Vitis vinifera), 5'ss of exon 1
CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgcct------tcgcacttggccttggtttagctaagccttggaggccgcgcggagcgcggacggatggtgaccgccggtgacggcaatgctgcaacgggcaataatgcag---------------------------
||||||||| ||||| || || |||||||| |||||  |||| ||||| |||||||| ||||||||||||||   ||||||  ||||||| |||||||| ||  | |  ||      || | |    || |  || |  |      |||||      | |       |   ||        |  |   |   | || |   || |      ||   |                           
CTTCGTGGTGTGGCGTCCTCCTGAGTTCGCTCGCGATCTCCTTCCCAATTACTTCAAACACAACAACTTCTCAAGCTTCGTCAGACAGCTCAACACCTATgtatgccttctctctcttcccccacttcccttcttcaaatcgtttctggagatgtaactggttatatatatatatatgaaacaagcttct-tattgtttttactgatttagattttgttttgcttgcttgcttccggaaactag

upper sequence: GRMZM2G088242_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S85_27V6.1 (Physcomitrella patens), 5'ss of exon 1
CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagt--cgccttcgcacttggccttggtttagctaagccttggaggccgcgcggagcgcggacggatg-gtgaccgccggtgacggcaatgctgcaacgggcaataatgcag
|||||| || ||||| || || ||||| ||| | ||  || | || |||||||||||||||||||| || |||  |||||| || || ||||||||||| || ||   ||| ||   ||    |||||  |    | |   | | | ||| | | |    |  ||      || |  |  |   ||  | ||     || ||   |        
CTTCGTCGTTTGGCGTCCTCCTGAGTTTGCGAGAGATCTCTTGCCGAACTACTTCAAGCACAACAATTTTTCCAGCTTCGTGCGGCAACTAAACACCTATgtaagctccgcatttctacacaaccttgactattgtga---tggaacgcctctctgttaacttaccagcatgtaaatga-gacaac--cgatcagataaaggagga--------

upper sequence: GRMZM2G088242_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S207_20V6.1 (Physcomitrella patens), 5'ss of exon 1
CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgccttcgcacttggccttggtttagctaagccttggaggccgcgcggagcgcggacggatggtgaccgccggtgacggcaatgctgcaacgggcaataatgcag-
||||||||||||||| ||||| ||||| || || ||| | || || || |||||||||||||| || ||||||  ||| ||| | ||||| ||||||||||| |||||      |||||      |   | |  ||   |   |||  |  ||      |   | | |||||       |||   | | |||  |   | ||  |  |  | 
CTTCGTGGTCTGGCGACCGCCAGAGTTTGCACGGGACTTGCTTCCTAATTACTTCAAGCACAATAATTTCTCCAGCTTTGTTAGGCAGCTCAACACCTACgtaagtcgatc---cacttaag--ggacgttgtaaaatatc--aggatgatcgagatttga--gaaaggtgaaatt---tgaaaactaggctcgagaagacaccagggttgg

upper sequence: GRMZM2G088242_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ15796 (Selaginella moellendorffii), 5'ss of exon 1
CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgccttcgcacttggccttggtttagctaagccttggaggccgcgcggagcgcggacggatggtgaccgccggtgacggcaat--gctgcaacgggcaataatgcag-------------------------------
 ||| | |||||||| || ||||| |||||    || ||| | || || |||||||||||||| |||||||||   ||||| || ||||| ||||||||||||||||    |||||   |   |   |  |   |   | |    |      ||||  | | |   | ||   |  |  |  | | | |  ||| || | | |||| |||  |                               
GTTCATCGTCTGGCGACCCCCGGAATTCGCCAAGGATATCTTGCCGAATTACTTCAAGCACAATAACTTCTCCAGTTTCGTCCGGCAGCTCAACACCTACgtgagtc----tcgcatacgttttctttcca--cacctcctcatagttctttggagttcagtcccttagt--tcttcacttgcagtactcagcttcagctgtcaatgatgttgcccactgaacttcgttcttgtcgactcgcag

upper sequence: GRMZM2G088242_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ31857 (Selaginella moellendorffii), 5'ss of exon 1
CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgccttc---gcacttggcc-ttggttta---gctaagccttggaggc---cgcgcggagcgcggacggatggtgaccgccggtgacggcaatgctgcaacgggcaa-taatgcag----------------------
 ||||| || |||   ||||| ||||||||   |||  | ||||||| ||||||||||||||||||||||||   |||||| || ||||| ||||| || ||||||  | |||   || ||||    || |||     |||  |||||     |   | | ||     |   ||   | |  |   || |    ||||   |    | ||||| | |  ||                       
ATTCGTCGTGTGGAAGCCGCCCGAGTTCGCCACCGATTTGCTCCCCAGCTACTTCAAGCACAACAACTTCTCGAGCTTCGTCCGGCAGCTCAACACATATgtgagttccattccaagctcttgtttgttcgttcgctcgctttgccttcctatctttctctcgttcttccaccgagcgtttgct-tcgatccttgcaagagtctctctggcaactcactcacattgcaacaatgctgtgtgcag

upper sequence: GRMZM2G088242_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ28850 (Selaginella moellendorffii), 5'ss of exon 1
CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgccttcgcacttggccttggtttagctaagccttggaggccgcgcggagcgcggacggatggtgaccgccggtgacggcaatgctgcaacgggcaataatgcag
|||||| || ||| | ||||| |||||||| |||||| | ||||| |||||||||||||||||||| ||||||  |||||| || ||||| |||||||| |||||||    || |   |  |||||    ||||    ||||    |||  | || |     |  || ||  |   |  |  | |                          
CTTCGTCGTGTGGAGGCCGCCAGAGTTCGCCCGCGACTTGCTCCCAAACTACTTCAAGCACAACAATTTCTCCAGCTTCGTGCGGCAGCTCAACACCTATgtgagtc----tctcgaatcaccttga---agctctcacttgttctccgatctgatcat---cttatcgtcgcgttc--ttgcag--------------------------

upper sequence: GRMZM2G088242_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ38003 (Selaginella moellendorffii), 5'ss of exon 1
CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgccttc---gcacttggcc-ttggttta---gctaagccttggaggc---cgcgcggagcgcggacggatggtgaccgccggtgacggcaatgctgcaacgggcaa-taatgcag----------------------
 ||||| || |||   ||||| ||||||||   |||  | ||||||| ||||||||||||||||||||||||   |||||| || ||||| ||||| || ||||||  | |||   || ||||    || |||     |||  |||||     |   | | ||     |   ||   | |   |   | |    ||||   |    | ||||| | |  ||                       
ATTCGTCGTGTGGAAGCCGCCCGAGTTCGCCACCGATTTGCTCCCCAGCTACTTCAAGCACAACAACTTCTCGAGCTTCGTCCGGCAGCTCAACACATATgtgagttccattccaagctcttgtttgttcgttcgctcgctttgccttcctatctttctctcgttcttccaccgagcgttttgctttgatccttgcaagagtctctctggcaactcactcacattgcaacaatgctgtgtgcag

upper sequence: GRMZM2G088242_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ17520 (Selaginella moellendorffii), 5'ss of exon 1
CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgccttcgcacttggccttggtttagctaagccttggaggccgcgcggagcg-cggacggatggtgaccgccggtgacggcaatgctgcaacgggcaataatgcag
|||||| || ||| | ||||| |||||||| |||||| | ||||| |||||||||||||||||||| ||||||  |||||| || ||||| |||||||| || |||  || ||| |     |||||     |||    ||||    | |  | || |  |  |    || |  |   | |                                
CTTCGTCGTGTGGAGGCCGCCAGAGTTCGCCCGCGACTTGCTCCCAAACTACTTCAAGCACAACAATTTCTCCAGCTTCGTGCGGCAGCTCAACACCTATgtaagt--ccctcgaatc--accttgac---gctctcacttgttctctgatctgatcatcttatcattgctttcttgcag--------------------------------

upper sequence: GRMZM2G088242_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ32930 (Selaginella moellendorffii), 5'ss of exon 1
CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgccttcgcacttggccttggt------ttagctaagccttggag----gccgcgcggagcgcggacggatggtgaccgccggtgacggcaatgctgcaacg----ggcaataatgcag-------------------------------
 ||||| |||||||| || ||||| |||||    || ||| | || || |||||||||||||| |||||||||   ||||| || ||||| |||||||||||||||| ||    |  ||    |          |        | ||||||    | | |   |  |   | | | ||  || | |  |        | ||| || |     | |||| |||  |                               
GTTCGTCGTCTGGCGACCCCCGGAATTCGCCAAGGATATCTTGCCGAATTACTTCAAGCACAATAACTTCTCCAGTTTCGTCCGGCAGCTCAACACCTACgtgagtctcccatacgttttctttccacacctcctccatagttctttggagttcagtcccttagttcttcgccagttgtcgatcacttgcagtactca-gcttcagcattttgtcaatgatgttgcgcactgaacttcgttcttgtcgactcgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211348427|gb|FL046800.1|FL046800
EST:     ACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTAC                         GGGTTCCGGAAGGTCGTCCCGGAGCGGTGGGAGTTCGGGAACGAGTTCTTC
genomic: ACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgcc ... aataatgcagGGGTTCCGGAAGGTCGTCCCGGAGCGGTGGGAGTTCGGGAACGAGTTCTTC
EST: gi|211348425|gb|FL046798.1|FL046798
EST:     ACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTAC                         GGGTTCCGGAAGGTCGTCCCGGAGCGGTGGGAGTTCGGGAACGAGTTCTTC
genomic: ACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgcc ... aataatgcagGGGTTCCGGAAGGTCGTCCCGGAGCGGTGGGAGTTCGGGAACGAGTTCTTC
EST: gi|211348426|gb|FL046799.1|FL046799
EST:     ACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTAC                         GGGTTCCGGAAG-TCGTCCCGGAGCGGTGGGAGTTCGGGAACGAGTTCTTC
genomic: ACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgcc ... aataatgcagGGGTTCCGGAAGGTCGTCCCGGAGCGGTGGGAGTTCGGGAACGAGTTCTTC
EST: gi|148995072|gb|EE034375.2|EE034375
EST:     ACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTAC                         GGGTTCCGGAAGGTCGTCCCGGAGCGGTGGGAGTTCGGGAACGAGTTCTTC
genomic: ACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgcc ... aataatgcagGGGTTCCGGAAGGTCGTCCCGGAGCGGTGGGAGTTCGGGAACGAGTTCTTC
EST: gi|211348424|gb|FL046797.1|FL046797
EST:     ACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTAC                         GGGTTCCGGAAGGTCGTCCCGGAGCGGTGGGMGTTCGGGAACGAGTTCTTC
genomic: ACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgcc ... aataatgcagGGGTTCCGGAAGGTCGTCCCGGAGCGGTGGGAGTTCGGGAACGAGTTCTTC
EST: gi|211348423|gb|FL046796.1|FL046796
EST:     ACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTAC                         GGGTTCCGGAAGGTCGTCCCGGAGCGGTGGGAGTTCGGGAACGAGTTCTTC
genomic: ACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgcc ... aataatgcagGGGTTCCGGAAGGTCGTCCCGGAGCGGTGGGAGTTCGGGAACGAGTTCTTC
EST: gi|148995073|gb|EE034376.2|EE034376
EST:     ACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTAC                         GGGTTCCGGAAGGTCGTCCCGGAGCGGTGGGAGTTCGGGAACGAGTTCTTC
genomic: ACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgcc ... aataatgcagGGGTTCCGGAAGGTCGTCCCGGAGCGGTGGGAGTTCGGGAACGAGTTCTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 38

CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgcc ... aataatgcagGGGTTCCGGAAGGTCGTCCCGGAGCGGTGGGAGTTCGGGAACGAGTTCTTCCGGAAGGGGGAGAAGCAGCTGCTGTGCGAGATCCACCGGCGGAAGACGT


Block sizes: 28 (upstream exon), 33 (downstream exon)
Score: 2

CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgcc ... aataatgcagGGGTTCCGGAAGGTCGTCCCGGAGCGGTGGGAGTTCGGGAACGAGTTCTTCCGGAAGGGGGAGAAGCAGCTGCTGTGCGAGATCCACCGGCGGAAGACGT


Block sizes: 47 (upstream exon), 39 (downstream exon)
Score: 5

CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgcc ... aataatgcagGGGTTCCGGAAGGTCGTCCCGGAGCGGTGGGAGTTCGGGAACGAGTTCTTCCGGAAGGGGGAGAAGCAGCTGCTGTGCGAGATCCACCGGCGGAAGACGT


Block sizes: 18 (upstream exon), 32 (downstream exon)
Score: 1

CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgcc ... aataatgcagGGGTTCCGGAAGGTCGTCCCGGAGCGGTGGGAGTTCGGGAACGAGTTCTTCCGGAAGGGGGAGAAGCAGCTGCTGTGCGAGATCCACCGGCGGAAGACGT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCGTGGTCTGGCGCCCGCCGGAGTTCGCGCGCGACATCCTCCCCAACTACTTCAAGCACAACAACTTCTCCTCCTTCGTTCGACAGCTAAACACCTACgtgagtcgccttcgcacttggccttggtttagctaagccttggaggccgcgcggagcgcggacggatggtgaccgccggtgacggcaatgctgcaacgggcaataatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC