Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTCGCCTCAGTGCTTGGGTTTGCAGGCCGTGGTCTGGCGGCCAACCAGGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctcttcttcttctttttcttctttctctgcagtgaaatactgttgaattgttttcatgatgctgatcgaatcgttcagacag

Basic information

species Zea mays
transcript GRMZM2G087590_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211467559|gb|FL331132.1|FL331132
EST:     CTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATKACAG                         GTTGGAGAACGTACCGCAG-CCAGACGACAAGTCCGGTGGCCA
genomic: CTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAAT----Ggtgagctctt ... gttcagacagGTTGGAGAACGTACCGCAGGCCAGACGACAAGTCCGGTGGCCA
EST: gi|211031238|gb|FL345768.1|FL345768
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|211031238|gb|FL345768.1|FL345768
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|211031238|gb|FL345768.1|FL345768
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|211031238|gb|FL345768.1|FL345768
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|10191664|gb|BE761740.1|BE761740
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         GTTGGAGAACGTACCGCAGGCCAGACGACAAGTCCGGTGGCCACGGAGTTG
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacagGTTGGAGAACGTACCGCAGGCCAGACGACAAGTCCGGTGGCCACGGAGTTG
EST: gi|149109559|gb|EE190265.2|EE190265
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         GTTGGAGAACGTACCGCAGGCCAGACGACAAGTCCGGTGGCCACGGAGTTG
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacagGTTGGAGAACGTACCGCAGGCCAGACGACAAGTCCGGTGGCCACGGAGTTG
EST: gi|211515167|gb|FL354447.1|FL354447
EST:     CTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATNACAG                         GTTGGAGAACGTACCGCAG
genomic: CTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAAT----Ggtgagctctt ... gttcagacagGTTGGAGAACGTACCGCAG
EST: gi|148944807|gb|EC889952.2|EC889952
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         GTTGGAGAACGTACCGCAGGCCAGACGACAAGTCCGGTGGCCACGGAGTTG
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacagGTTGGAGAACGTACCGCAGGCCAGACGACAAGTCCGGTGGCCACGGAGTTG
EST: gi|211462686|gb|FL336831.1|FL336831
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         GTTGGAGAACGT
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacagGTTGGAGAACGT
EST: gi|211407509|gb|FL355689.1|FL355689
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         GTTGGAGAACGTACCGCAG-CCAGACGACAAGTCCGGTGGCCACGGAGTTG
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacagGTTGGAGAACGTACCGCAGGCCAGACGACAAGTCCGGTGGCCACGGAGTTG
EST: gi|211537101|gb|FL312472.1|FL312472
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|211537101|gb|FL312472.1|FL312472
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|211537101|gb|FL312472.1|FL312472
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|211537101|gb|FL312472.1|FL312472
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|211136982|gb|FL319355.1|FL319355
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|211136982|gb|FL319355.1|FL319355
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|211136982|gb|FL319355.1|FL319355
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|211136982|gb|FL319355.1|FL319355
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|211297274|gb|FL314569.1|FL314569
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|211297274|gb|FL314569.1|FL314569
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|211297274|gb|FL314569.1|FL314569
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|211297274|gb|FL314569.1|FL314569
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|149109558|gb|EE293367.2|EE293367
EST:     TTGTCTGAACCTGACGAAAATG                         G-TGGAGAACGTACCGCAGGCCAGACGACAAGTCCGGTGGCCACGGAGTTG
genomic: TTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacagGTTGGAGAACGTACCGCAGGCCAGACGACAAGTCCGGTGGCCACGGAGTTG
EST: gi|211118995|gb|FL350366.1|FL350366
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|211118995|gb|FL350366.1|FL350366
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|211118995|gb|FL350366.1|FL350366
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|211118995|gb|FL350366.1|FL350366
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         A
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacag-
EST: gi|149102821|gb|EE188292.2|EE188292
EST:     GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATG                         GTTGGAGAACGTACCGCAGGCCAGACGACAAGTCCGGTGGCCACGGAGTTG
genomic: GGGCCTGCTCGCCGGGAGGGTCCCCGGCTTGTCTGAACCTGACGAAAATGgtgagctctt ... gttcagacagGTTGGAGAACGTACCGCAGGCCAGACGACAAGTCCGGTGGCCACGGAGTTG