1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGAGGACAGAGGAGGAGCAGAGGACGATGGGCAGCGGCGGCGCTAACACTGCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccctgcccctttgctttctggttgggccaattcccaatttcctaaccagtaaccacccatagcagcagcaatcaagcggtttctgcttagttcc...
species | Zea mays |
transcript | GRMZM2G087192_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAEST: gi|211459461|gb|FL315095.1|FL315095
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|211046904|gb|FL342230.1|FL342230
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|211434603|gb|FL306594.1|FL306594
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|211538244|gb|FL353979.1|FL353979
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|211438615|gb|FL361924.1|FL361924
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|78105288|gb|DV523706.1|DV523706
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAEST: gi|71766717|gb|DR964654.1|DR964654
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAEST: gi|211372990|gb|FL342986.1|FL342986
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|78110280|gb|DV528695.1|DV528695
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAEST: gi|71769744|gb|DR967681.1|DR967681
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAEST: gi|211004021|gb|FL317949.1|FL317949
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|211049230|gb|FL320166.1|FL320166
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|71448418|gb|DR829468.1|DR829468
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|31363471|gb|CD447828.1|CD447828
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAEST: gi|211516970|gb|FL321888.1|FL321888
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACA- GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|211086396|gb|FL335516.1|FL335516
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|76017395|gb|DT944565.1|DT944565
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAEST: gi|71431905|gb|DR812955.1|DR812955
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAEST: gi|211215728|gb|FL322479.1|FL322479
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|211399636|gb|FL347340.1|FL347340
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCAEST: gi|76281886|gb|DV021454.1|DV021454
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGGACAGAGGAGGAGCAGAGGACGATGGGCAGCGGCGGCGCTAACACTGCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccctgcccctttgctttctggttgggccaattcccaatttcctaaccagtaaccacccatagcagcagcaatcaagcggtttctgcttagttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctgc