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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCAGCGGCTGCGGCTGGGAGCGCGGTGGCTGTGGTGTCGGCTGCGGTGGCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttctcccttccgattggccaaaggcggcgcctttaggattttaggtgcctcatattcggttcttgttacatgaggttcatttggctgctgctga...

Basic information

species Zea mays
transcript GRMZM2G087144_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148981030|gb|EE027393.2|EE027393
EST:     GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG                         GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: gi|149106092|gb|EE291756.2|EE291756
EST:     GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG                         GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: gi|148939166|gb|EC883612.2|EC883612
EST:     GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG                         GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: gi|211081607|gb|FL369112.1|FL369112
EST:     GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG                         GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: gi|211426207|gb|FL392504.1|FL392504
EST:     GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG                         GGGTGGTCTTAAATCTCCATGG
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGG
EST: gi|211076165|gb|FL369890.1|FL369890
EST:     GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG                         GGGTGGTCTTAAATCTCCATGGTCCCGGAGGATAAGA
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGA
EST: gi|50332287|gb|CO527413.1|CO527413
EST:     GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG                         GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: gi|211469235|gb|FL410783.1|FL410783
EST:     GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG                         GGGTGGTCYTAAATCTCCATGGTCCCGGAGGAAAAGAA
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAA
EST: gi|211097332|gb|FL386847.1|FL386847
EST:     GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG                         GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: gi|211397522|gb|FL373465.1|FL373465
EST:     GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG                         NNGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: gi|211328212|gb|FL409834.1|FL409834
EST:     GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG                         GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: gi|211392710|gb|FL395249.1|FL395249
EST:     GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG                         GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: gi|211476313|gb|FL383250.1|FL383250
EST:     GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG                         GGGTGGTCTTAAATCTCCATGGTCCCGGAAGAAAAGAAA-CGAGCACTTTC
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: gi|50325323|gb|CO520449.1|CO520449
EST:     GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG                         GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: gi|148959376|gb|EC905424.2|EC905424
EST:     GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG                         GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: gi|148964953|gb|EE015802.2|EE015802
EST:     GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG                         GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: gi|211082072|gb|FL392684.1|FL392684
EST:     CCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGNAGCG                         GGGTGGTCTTAAATCTCCATGGTCCCGGAGGGAAAGAAA-CGAGCACTTT
genomic: CCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGG-AGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTT