1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCGCAGCGGCTGCGGCTGGGAGCGCGGTGGCTGTGGTGTCGGCTGCGGTGGCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttctcccttccgattggccaaaggcggcgcctttaggattttaggtgcctcatattcggttcttgttacatgaggttcatttggctgctgctga...
species | Zea mays |
transcript | GRMZM2G087144_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTCEST: gi|50325323|gb|CO520449.1|CO520449
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTCEST: gi|148959376|gb|EC905424.2|EC905424
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTCEST: gi|211081607|gb|FL369112.1|FL369112
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTCEST: gi|211426207|gb|FL392504.1|FL392504
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG GGGTGGTCTTAAATCTCCATGGEST: gi|211076165|gb|FL369890.1|FL369890
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGG
EST: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG GGGTGGTCTTAAATCTCCATGGTCCCGGAGGATAAGAEST: gi|211469235|gb|FL410783.1|FL410783
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGA
EST: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG GGGTGGTCYTAAATCTCCATGGTCCCGGAGGAAAAGAAEST: gi|211097332|gb|FL386847.1|FL386847
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAA
EST: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTCEST: gi|148964953|gb|EE015802.2|EE015802
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTCEST: gi|211328212|gb|FL409834.1|FL409834
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTCEST: gi|211397522|gb|FL373465.1|FL373465
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG NNGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTCEST: gi|211392710|gb|FL395249.1|FL395249
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTCEST: gi|211476313|gb|FL383250.1|FL383250
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG GGGTGGTCTTAAATCTCCATGGTCCCGGAAGAAAAGAAA-CGAGCACTTTCEST: gi|149106092|gb|EE291756.2|EE291756
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTCEST: gi|211082072|gb|FL392684.1|FL392684
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: CCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGNAGCG GGGTGGTCTTAAATCTCCATGGTCCCGGAGGGAAAGAAA-CGAGCACTTTEST: gi|148981030|gb|EE027393.2|EE027393
genomic: CCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGG-AGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTT
EST: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTCEST: gi|148939166|gb|EC883612.2|EC883612
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
EST: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCG GGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
genomic: GCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttct ... atatttacagGGGTGGTCTTAAATCTCCATGGTCCCGGAGGAAAAGAAAACGAGCACTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGCAGCGGCTGCGGCTGGGAGCGCGGTGGCTGTGGTGTCGGCTGCGGTGGCCGCCTCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGAGCGgtaggtttctcccttccgattggccaaaggcggcgcctttaggattttaggtgcctcatattcggttcttgttacatgaggttcatttggctgctgctga
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