Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCGAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgccgtcccccgcctgcttcccgtatcctagatctgaccgcacccgattggatcctgtccatttctggcttccgtttgcctttctgatccgttcttgtctcgatcgctgcag

Basic information

species Zea mays
transcript GRMZM2G086636_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086636_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g23620.1 (Oryza sativa), 5'ss of exon 1
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCGAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgccgtcccccgcctgcttcccgtatcctagatctgaccgcacccgattggatcctgtccatttctggcttccgtttgcctttctgatccgttcttgtct-cgatcgc-tgcag-------------------
||| || || || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |    |   ||  |||| |  || | | |||     |  ||  | || |||  || ||  ||||||||   ||| |||| |    ||||||||||   ||| |  |   || |||                     
GCTCGCGTCGCTGGGGCTGTGGCAGAAGGAGGCCAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTCAAGGACGAGgtaccctcctacccttcgcccggatctc-tctcccctcccccacaaccccagatctgacccgatccatttcc--ctttcgttgga---tctgatccgtctgtgtttgtgcgtgcgtgcgtgcgtgggcggatggtgcag

upper sequence: GRMZM2G086636_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA10G28910.1 (Glycine max), 5'ss of exon 1
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCGAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgccgtcccccgcctgcttcccgtatcctagatctgaccgcacccgattggatcctgtccattt--ctggcttccgtttgcctttctgatccgttcttgtctcgatcgctgcag
 ||||| || || ||  |||||||||||||||| |||||| | ||| | || ||||| || ||||| ||||||||  |||| ||||||||||| |||||||||     || |   |||| |    || | |||   | | | |    ||  |   | ||  | | | |||   | |  ||| ||||      | |    || ||  |  ||         
TCTGGCATCGCTTGGGTTGTGGCAGAAGGAGGCCAAGATCTTATTCTTAGGTCTCGATAATGCCGGAAAGACCACCTTGCTTCACATGCTCAAAGACGAGgttt----cccttttccgcttaagccctgaatc---gctttaaatttactgg---gaatgttattcttttagttagaatccttttgtacaatttaaatattatta-cgaga---------

upper sequence: GRMZM2G086636_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA19G41670.1 (Glycine max), 5'ss of exon 1
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCGAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgccgtcccccgcctgcttcccgtatcctagatctgaccgcacccgattggatcctgtccatttctggcttccgtttgcctttctgatccgttcttgtctcgatcgctgcag
 || || || ||||| ||||||||||||||||| |||||| | ||| | |||||||| ||||| ||||| || ||  |||| ||||||||||| || ||||||  | |   |  ||    |  ||   || |||   |||       |||   ||   |  |    |||    |  |  ||||  |                                
TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgtt--ttgt--tttccttttttttttttgtttccccaatcg---tttaccttttttttttattattattataagagttggttttgcag------------------------------

upper sequence: GRMZM2G086636_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA03G39110.2 (Glycine max), 5'ss of exon 1
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCGAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgccgtcccccgcctgcttcccgtatcctagatctgaccgcacccgattgg-atcctgtccatttctggcttccgtttgcctttctgatccgttcttgtctcgatcgctgcag
 || || || || |||||||||||||||||||| |||||| | ||| | |||||||| ||||| ||||| |||||  |||| ||||||||||| || ||||||| ||  |     |       ||||| | |  | | |    || ||   | ||   ||  | |    || ||| |||  |     |    |||| |  ||| | |            
TCTAGCGTCGCTTGGCCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACCACCTTGCTTCACATGCTCAAAGATGAGgttcctcttcaatttct-----tttcccttttttttgttt---ccccaattgtttaatattgttttttcttttggattcgttaatagtggtggatctgcccttatttg-----------

upper sequence: GRMZM2G086636_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA20G38360.1 (Glycine max), 5'ss of exon 1
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCGAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgccgtcccccgcctgcttcccgtatcctagatctgaccgcacc--cgattggatcctgtccatttctggcttccgtttgcctttctgatccgttcttgtctcgatcgctgcag
 ||||| || || ||  |||||||||||||||| |||||| | ||| | || ||||| || ||||| ||||||||  |||| ||||||||||| |||||||||   |     ||  |   | |  |   | ||   | ||   |  |||   || ||    ||||      | |   ||     ||    ||| || ||||                   
TCTGGCATCGCTTGGATTGTGGCAGAAGGAGGCCAAGATCTTATTCTTAGGTCTCGATAATGCCGGAAAGACCACCTTGCTTCACATGCTCAAAGACGAGgttt-ccctttcccatccttttccgcttatttctctgctccttcttcacaaacgcttaagccctgaatcgatttaaattta--ctgggaatcttattcgttta-----------------

upper sequence: GRMZM2G086636_T03 (Zea mays), 5'ss of exon 1
lower sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCGAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgccgtcccccgcctgcttcccgtatcctagatctgaccgcacccgattggatcctgtccatt--tctggcttccgtttgcctttctgatccgttcttgtctcgatcgctgcag
||| ||| || | ||  | |||||||||||||| || ||| | ||||||||| | ||||||||||||||||||||| |||| |||||||||||||| |||||        |  | |||  |||| ||   |   ||| |      | |   ||  || |    | ||    |  ||  |  | | | ||||||  |   || ||   |            
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtg------agggctccgtttgctccc--aaggatagttagagatgga---gagcgggtttcattcacgggttgggactgtgctgggctttcttgtttattgttaaatttc---------

upper sequence: GRMZM2G086636_T03 (Zea mays), 5'ss of exon 1
lower sequence: PP1S7_338V6.1 (Physcomitrella patens), 5'ss of exon 1
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCGAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgccgtcccccgcctgcttcccgtatcctagatctgaccgcacccgattggatcctgtccatttctggcttccgtttgcctttctgatccgttcttgtctcgatcgctgcag
||| ||  || | || || ||||||||||||||||| ||||| ||||||||| | || ||||| |||||||||||| |||| |||||||||||||| |||||  |  || | |     || |||    | |    ||    ||  | |   ||  | |     |  ||    |||||  | | |  ||||   | |  | |||| ||           
GCTTGCGACCTTAGGGCTATGGCAGAAGGAGGCGAAAATCCTGTTCCTCGGCTTGGATAACGCGGGCAAGACCACGTTGCTACACATGCTCAAGGATGAGgtaagg-gctggctt--accagctagaaggaagaaaggaaggaaggaag--gagggcagggaatttataaacggcttgagatag--tttcgtgtgctgtgttgtttc-----------

upper sequence: GRMZM2G086636_T03 (Zea mays), 5'ss of exon 1
lower sequence: PP1S10_357V6.1 (Physcomitrella patens), 5'ss of exon 1
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCGAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgccgtcccccgcct-gcttcccgtatcctagatctga--ccgcacccgattggatcctgtccatttctggcttccgtttgcctttctgatccgttcttgtctcgatcgctgcag
 || ||   | | || ||||||||||||||||| || ||||| || || || |||||||| || |||||||| || || || |||||||||||||| |||||| | | |  |   | |  | | |||| |  |  |  || | |   |||    ||| |  | |     ||||  | ||   |  |   |  |  |||||||                   
TCTTGCGAGCATAGGGCTGTGGCAGAAGGAGGCCAAAATCCTGTTTCTGGGTCTCGACAATGCTGGCAAGACTACTCTTCTGCACATGCTCAAGGATGAGgttagactctcttttctgttttgattcctgcttggtcaatttcaattcgcggttgatagcgtaccaa--attttcgcctctagaatcgataacgtatccgtt-------------------

upper sequence: GRMZM2G086636_T03 (Zea mays), 5'ss of exon 1
lower sequence: PP1S44_58V6.1 (Physcomitrella patens), 5'ss of exon 1
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCGAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgccgtcccccgcctgcttcccgtatcctagatctgaccgcacccgattggatcctgtccatttctggcttccgtttgcctttctgatccgttcttgtctcgatcgctgcag
 || ||   | | ||  |||||||||||||||| || ||| | ||||| || || ||||| ||||| ||||| || || || |||||||||||||| ||||| |  | |  |  || |  | |||| | | |  |   | |   | |||             ||   |  |||||| ||| | |   |     || |||  |||||  || ||| | |
TCTTGCGAGCATAGGTTTGTGGCAGAAGGAGGCCAAAATCTTGTTCCTGGGTCTTGACAATGCCGGGAAGACGACACTTCTGCACATGCTCAAGGATGAGgtcctcccc--ttgccagatttcttctccttttttttcttttttcccacg------------gtttgtgcctggctgccgctagaaat----gtcggtttctgtcttcatggcttctg

upper sequence: GRMZM2G086636_T03 (Zea mays), 5'ss of exon 1
lower sequence: EFJ35155 (Selaginella moellendorffii), 5'ss of exon 1
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCGAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgccgtcccccgcctgcttcccgtatcctagatctg-accgcacccgattggatcctgtccatttctggcttccgtttgcctttctgatccgttcttgtctcgatcgctgcag
| ||||| | ||||| ||||||||||||||||| ||||| |||||||| || |||||||| || || || || ||||| |||||||||||||||||||||||  ||    ||  || || | |         |||||| ||  | |||   |    |   ||| ||     |   |||  | ||   |||||  |    | || || | ||   | |||
GTTGGCCACGCTCGGGCTGTGGCAGAAGGAGGCCAAGATTCTCTTCCTAGGTCTCGACAATGCGGGGAAAACAACGCTTCTCCACATGCTCAAGGACGAGgtgagt---ggtttccagcttac---------cctagagctccatcgcgttctgaggccgcctctctcgcgcgctcttttggttttttttctttttttcttttctcgcaattcttccag

upper sequence: GRMZM2G086636_T03 (Zea mays), 5'ss of exon 1
lower sequence: EFJ16976 (Selaginella moellendorffii), 5'ss of exon 1
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCGAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgccgtcccccgcctgcttcccgta--tcctagatctg---accgcacccgattggatcctgtccatttctggcttccgtttgcctttctgatccgttcttgtctcgatcgctgcag
  | ||   ||| || ||||||||||||||||  |||||| | ||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||  |      ||       | | |||  ||  || | ||||||   |  || || |    |                                                             
CTTAGCGAGCCTAGGGCTGTGGCAGAAGGAGGGCAAGATCTTGTTCCTAGGGCTCGACAACGCCGGCAAGACGACGCTGCTACACATGCTCAAGGACGAGgtaagcgaatttcttggaatttcctcctctaggtcatggatctggggattgcgcctgcgcag-------------------------------------------------------------

upper sequence: GRMZM2G086636_T03 (Zea mays), 5'ss of exon 1
lower sequence: EFJ12822 (Selaginella moellendorffii), 5'ss of exon 1
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCGAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgccgtcccccgcctgcttcccgta--tcctagatctg---accgcacccgattggatcctgtccatttctggcttccgtttgcctttctgatccgttcttgtctcgatcgctgcag
  | ||   ||| || ||||||||||||||||  |||||| | ||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||  |      ||       | | |||| ||  || | ||||||   |  || || |    |                                                             
CTTAGCGAGCCTAGGGCTGTGGCAGAAGGAGGGCAAGATCTTGTTCCTAGGGCTCGACAACGCCGGCAAGACGACGCTGCTACACATGCTCAAGGACGAGgtaagcgaatttcttggaatttcctcccctaggtcatggatctggggattgcgcctgcgcag-------------------------------------------------------------

upper sequence: GRMZM2G086636_T03 (Zea mays), 5'ss of exon 1
lower sequence: EFJ24104 (Selaginella moellendorffii), 5'ss of exon 1
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCGAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgccgtcccccgcctgcttcccgtatcctagatctgaccgcacccgattggatcctgtccatttctggcttccgtttgcctttctgatccgttcttgtctcgatcgctgcag
| ||||| | ||||| ||||||||||||||||| ||||| |||||||| || |||||||| || || || || ||||| |||||||||||||||||||||||  ||    ||  || || | |         |||||||||  ||   | || |  ||  | | |  | |   ||   | ||||  ||| || |    | || || | ||   | |||
GTTGGCCACGCTCGGGCTGTGGCAGAAGGAGGCCAAGATTCTCTTCCTAGGTCTCGACAATGCGGGGAAAACAACGCTTCTCCACATGCTCAAGGACGAGgtgagt---ggtttccagcttac---------cctagatct--ccat-cgcgttctgaggccgcctctcttgcgcgctcttttggttttttg-ttttcttttctcgcaattcttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211022290|gb|FL044299.1|FL044299
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211024739|gb|FL044308.1|FL044308
EST:     GCCTCGACAACGCCGGCNAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCWGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAG
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAG
EST: gi|211022293|gb|FL044302.1|FL044302
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211024744|gb|FL044313.1|FL044313
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211022294|gb|FL044303.1|FL044303
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211129201|gb|FL391824.1|FL391824
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCAACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211323623|gb|FL398325.1|FL398325
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211421415|gb|FL412839.1|FL412839
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211497279|gb|FL426468.1|FL426468
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211024745|gb|FL044314.1|FL044314
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211024742|gb|FL044311.1|FL044311
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCMCCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211022292|gb|FL044301.1|FL044301
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211276738|gb|FL373276.1|FL373276
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211024740|gb|FL044309.1|FL044309
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211024746|gb|FL044315.1|FL044315
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211509318|gb|FL409469.1|FL409469
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCBACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|37424057|gb|CF649759.1|CF649759
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTC
EST: gi|211024737|gb|FL044306.1|FL044306
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211024741|gb|FL044310.1|FL044310
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211024738|gb|FL044307.1|FL044307
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211022295|gb|FL044304.1|FL044304
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGC
EST: gi|211439391|gb|FL402872.1|FL402872
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211024743|gb|FL044312.1|FL044312
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
EST: gi|211022296|gb|FL044305.1|FL044305
EST:     GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAG                         CGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC
genomic: GCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgcc ... atcgctgcagCGGTTGGTGCAGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTCAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCGAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgccgtcccccgcctgcttcccgtatcctagatctgaccgcacccgattggatcctgtccatttctggcttccgtttgcctttctgatccgttcttgtctcgatcgctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT