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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGGCCGCGCCCCCGGCGCACGCCGGCGCTGCCGTGCCTGGGCCCTGCATCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAGgtaaggtagccaagctacacgcggagcccccgaccccgatctcgcggtttgcgcgtggactcgatgcggtttcagcttaccggggcttccattccgtttgggcgcag

Basic information

species Zea mays
transcript GRMZM2G085747_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G085747_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g35960.2 (Oryza sativa), 5'ss of exon 1
GTCGGCCGCGCCCCCGGCGCACGCCGGCGCTGCCGTGCCTGGGCCCTGCATCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAGgtaaggtagccaagctacacgcggagcccccgaccccgatctcgcggtttgcgcgtggactcgatgcggtttc-agcttaccggggcttccattccgtttgggcgcag
| |||| || ||| | ||    |||||||| || ||||| || ||||||||||| ||||||||||||| ||||||||||||||| || |||| ||||||||||      || | ||   |||| | |  |   || || |||||||   || | |    | ||||   |||||  ||  ||||  |                      
GCCGGCGGCCCCCGCTGCCGCGGCCGGCGCCGCGGTGCCCGGCCCCTGCATCGTCCACAAGCGCGGCACCGACATCCTCCACGACCCATGGTTCAACAAGgtac-----ccgatct---cgcg-atctgcatgcctcgctctcgcgcgctggg-gctctcacgatttcgtttctggcacaccgcag----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76919658|gb|DV167819.1|DV167819
EST:     TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAG                         GATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
genomic: TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAGgtaaggtagc ... ttgggcgcagGATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
EST: gi|211274711|gb|FL015918.1|FL015918
EST:     TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAG                         GATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
genomic: TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAGgtaaggtagc ... ttgggcgcagGATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
EST: gi|211274712|gb|FL015919.1|FL015919
EST:     TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAG                         GATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
genomic: TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAGgtaaggtagc ... ttgggcgcagGATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
EST: gi|29130557|gb|CB381261.1|CB381261
EST:     TCGTGCACAAGCCCGGCAACGACATCCTCCACGATCCGTGGTACAACAAG                         GATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
genomic: TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAGgtaaggtagc ... ttgggcgcagGATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
EST: gi|29130494|gb|CB381198.1|CB381198
EST:     TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAG                         GATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
genomic: TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAGgtaaggtagc ... ttgggcgcagGATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
EST: gi|149102281|gb|EE287658.2|EE287658
EST:     TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAG                         GATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
genomic: TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAGgtaaggtagc ... ttgggcgcagGATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
EST: gi|211384290|gb|FL369291.1|FL369291
EST:     TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAG                         GATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
genomic: TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAGgtaaggtagc ... ttgggcgcagGATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
EST: gi|211048980|gb|FL422995.1|FL422995
EST:     TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAG                         GATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
genomic: TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAGgtaaggtagc ... ttgggcgcagGATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
EST: gi|211016654|gb|FL375789.1|FL375789
EST:     TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAG                         GATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
genomic: TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAGgtaaggtagc ... ttgggcgcagGATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
EST: gi|211527375|gb|FL402913.1|FL402913
EST:     TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAG                         GATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
genomic: TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAGgtaaggtagc ... ttgggcgcagGATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
EST: gi|211272913|gb|FL015917.1|FL015917
EST:     TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAG                         GATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
genomic: TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAGgtaaggtagc ... ttgggcgcagGATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
EST: gi|71437509|gb|DR818559.1|DR818559
EST:     TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAG                         GATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG
genomic: TCGTGCACAAGCGCGGCAACGACATCCTCCACGATCCGTGGTACAACAAGgtaaggtagc ... ttgggcgcagGATACGGCGTTCCCCATGACGGAGCGCGACCGCCTCGGTCTCCGCGGCTTG