1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCGTCCGCGCAGCAGCTCGCCGCTCTGGTGCTCGAGGCCACCTCCCACCCGGCCCTCTTCGCCTTCTCCGAGCTCCTCGCCCTCCCGGCCCTCTCCATGgtacgcaccccgcccttcggtggcttgctttgttacaccgggacccattgccggactaggattagggtttcattatccgtttgttctcgcgtcgaataggtggtgtgctgctcgatctgacgcgtgtttgtttgtttgtttgtttgtttcccggcacag
species | Zea mays |
transcript | GRMZM2G085670_T06 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCGCCCTCCCGGCCCTCTCCATG CTCGCTGGCACTCAGTACTCGTCTTCACTGGACTTGCTCCGGCTCTTCGCCEST: gi|211514961|gb|FL228214.1|FL228214
genomic: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCGCCCTCCCGGCCCTCTCCATGgtacgcaccc ... cccggcacagCTCGCTGGCACTCAGTACTCGTCTTCACTGGACTTGCTCCGGCTCTTCGCC
EST: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCGCCCTCCCGGCCCTCTCCATG CTCGCTGGCACTCAGTACTCGTCTTCACTGGACTTGCTCCGGCTCTTCGCCEST: gi|211512613|gb|FL228206.1|FL228206
genomic: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCGCCCTCCCGGCCCTCTCCATGgtacgcaccc ... cccggcacagCTCGCTGGCACTCAGTACTCGTCTTCACTGGACTTGCTCCGGCTCTTCGCC
EST: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCGCCCTCCCGGCCCTCTCCATG CTCGCTGGCACTCAGTACTCGTCTTCACTGGACTTGCTCCGGCTCTTCGCCEST: gi|211512618|gb|FL228211.1|FL228211
genomic: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCGCCCTCCCGGCCCTCTCCATGgtacgcaccc ... cccggcacagCTCGCTGGCACTCAGTACTCGTCTTCACTGGACTTGCTCCGGCTCTTCGCC
EST: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCGCCCTCCCGGCCCTCTCCATG CTCGCTGGCACTCAGTACTCGTCTTCACTGGACTTGCTCCGGCTCTTCGCCEST: gi|211512616|gb|FL228209.1|FL228209
genomic: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCGCCCTCCCGGCCCTCTCCATGgtacgcaccc ... cccggcacagCTCGCTGGCACTCAGTACTCGTCTTCACTGGACTTGCTCCGGCTCTTCGCC
EST: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCGCCCTCCCGGCCCTCTCCATG CTCGCTGGCACTCAGTACTCGTCTTCACTGGACTTGCTCCGGCTCTTCGCCEST: gi|211512617|gb|FL228210.1|FL228210
genomic: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCGCCCTCCCGGCCCTCTCCATGgtacgcaccc ... cccggcacagCTCGCTGGCACTCAGTACTCGTCTTCACTGGACTTGCTCCGGCTCTTCGCC
EST: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCGCCCTCCCGGCCCTCTCCATG CTCGCTGGCACTCAGTACTCGTCTTCACTGGACTTGCTCCGGCTCTTCGCCEST: gi|211281965|gb|FL132366.1|FL132366
genomic: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCGCCCTCCCGGCCCTCTCCATGgtacgcaccc ... cccggcacagCTCGCTGGCACTCAGTACTCGTCTTCACTGGACTTGCTCCGGCTCTTCGCC
EST: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCGCCCTCCCGGCCCTCTCCATG CTCGCTGGCACTCAGTACTCGTCTTCACTGGACTTGCTCCGGCTCTTCGCC
genomic: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCGCCCTCCCGGCCCTCTCCATGgtacgcaccc ... cccggcacagCTCGCTGGCACTCAGTACTCGTCTTCACTGGACTTGCTCCGGCTCTTCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGTCCGCGCAGCAGCTCGCCGCTCTGGTGCTCGAGGCCACCTCCCACCCGGCCCTCTTCGCCTTCTCCGAGCTCCTCGCCCTCCCGGCCCTCTCCATGgtacgcaccccgcccttcggtggcttgctttgttacaccgggacccattgccggactaggattagggtttcattatccgtttgttctcgcgtcgaataggtggtgtgctgctcgatctgacgcgtgtttgtttgtttgtttgtttgtttcccggcacag
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