1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGCACGGAGCACGGTGCAGCCGTTGGCGCTGGTAACAACAGCCTGATCCGCCAGAGCAGCTCCCCCGCCGGCTTCCTCAACCACTTGAACATGGACAACGgtaatcggtggcccctctgcctcgtttcgtttgtattgtactgcctttttcttggtctctccggaagtagtagcgtcccaatgacccgctactgcgctaggcgcctagctttccatttgcggaggagtaattaaggaactgatcgcggcttgcaccttcttgcag
species | Zea mays |
transcript | GRMZM2G085467_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCAGAGCAGCTCCCCCGCCGGCTTCCTCAACCACTTGAACATGGACAACG GGTACGGGAGCATGCTCCGGGTGGGCATGGGCGGCGGCGGGTTCAGGAACGEST: gi|71765455|gb|DR963392.1|DR963392
genomic: CCAGAGCAGCTCCCCCGCCGGCTTCCTCAACCACTTGAACATGGACAACGgtaatcggtg ... cttcttgcagGGTACGGGAGCATGCTCCGGGTGGGCATGGGCGGCGGCGGGTTCAGGAACG
EST: CCAGAGCAGCTCCCCCGCCGGCTTCCTCAACCACTTGAACATGGACAACG GGTACGGGAGCATGCTCCGGGTGGGCATGGGCGGCGGCGGGTTCAGGAACGEST: gi|149085917|gb|EE175445.2|EE175445
genomic: CCAGAGCAGCTCCCCCGCCGGCTTCCTCAACCACTTGAACATGGACAACGgtaatcggtg ... cttcttgcagGGTACGGGAGCATGCTCCGGGTGGGCATGGGCGGCGGCGGGTTCAGGAACG
EST: CCAGAGCAGCTCCCCCGCCGGCTTCCTCAACCACTTGAACATGGACAACG GGTACGGGAGCATGCTCCGGGTGGGCATGGGCGGCGGCGGGTTCAGGAACG
genomic: CCAGAGCAGCTCCCCCGCCGGCTTCCTCAACCACTTGAACATGGACAACGgtaatcggtg ... cttcttgcagGGTACGGGAGCATGCTCCGGGTGGGCATGGGCGGCGGCGGGTTCAGGAACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCACGGAGCACGGTGCAGCCGTTGGCGCTGGTAACAACAGCCTGATCCGCCAGAGCAGCTCCCCCGCCGGCTTCCTCAACCACTTGAACATGGACAACGgtaatcggtggcccctctgcctcgtttcgtttgtattgtactgcctttttcttggtctctccggaagtagtagcgtcccaatgacccgctactgcgctaggcgcctagctttccatttgcggaggagtaattaaggaactgatcgcggcttgcaccttcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA