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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGCCGCGGCTCAGTGTCTGGACTGGGCTCCCGCGCGGCGTCGGGTGCGGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtgcaagtcgctccgtcctagcttgatttggtttcgtacgctgtagcggaggatcagctgtcaaaattattttttgggaaatggtcgaacgct...

Basic information

species Zea mays
transcript GRMZM2G085438_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G085438_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g49380.1 (Oryza sativa), 5'ss of exon 1
GGCCGCCGCGGCTCAGTGTCTGGACTGGGCTCCCGCGCGGCGTCGGGTGCGGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtgcaagtcgctccgtcctagcttgatttggtttcgta-cgctgtagcggaggatcagctgtcaaaattattttttgggaaatggt-cgaacgct-
|||||||||||| ||||| || |||||||| |||||||| || || ||||| | |||||||||||| |||||||||||||||||||||||||| |||||||| || |  ||  | | ||       |  | | ||| | || | |     |||       |  |   |   || |   | || |     |||| |    | | 
GGCCGCCGCGGCGCAGTGCCTCGACTGGGCCCCCGCGCGCCGCCGCGTGCGCGGCGCCTTCGCGCCTGTGCTCCCCACCCTCGACCACTGCCTGTTCAAGgtccg-tacgcctgccacttgaaa--aaatggttttagattagcagtagagtaaacagttaagatgaggtgaagtcgctcttggatcggtggtactgttgatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93016345|gb|EB641865.1|EB641865
EST:     GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAG                         ATGGCTCACAATGAAATCCAGATGGAAGAG
genomic: GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtg ... cattttgtagATGGCTCACAATGAAATCCAGATGGAAGAG
EST: gi|71307182|gb|DR789758.1|DR789758
EST:     GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAG                         ATGGCTCACAATGAAATCCAGATGGAAGAG
genomic: GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtg ... cattttgtagATGGCTCACAATGAAATCCAGATGGAAGAG
EST: gi|149076326|gb|EE164940.2|EE164940
EST:     GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAG                         ATGGCTCACAATGAAATCCAGATGGAAGAG
genomic: GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtg ... cattttgtagATGGCTCACAATGAAATCCAGATGGAAGAG
EST: gi|78123599|gb|DV541983.1|DV541983
EST:     GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAG                         ATGGCTCACAATGAAATCCAGATGGAAGAG
genomic: GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtg ... cattttgtagATGGCTCACAATGAAATCCAGATGGAAGAG
EST: gi|78106711|gb|DV525129.1|DV525129
EST:     GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAG                         ATGGCTCACAATGAAATCCAGATGGAAGAG
genomic: GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtg ... cattttgtagATGGCTCACAATGAAATCCAGATGGAAGAG
EST: gi|71439067|gb|DR820117.1|DR820117
EST:     GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAG                         ATGGCTCACAATGAAATCCAGATGGAAGAG
genomic: GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtg ... cattttgtagATGGCTCACAATGAAATCCAGATGGAAGAG
EST: gi|211083467|gb|FK983603.1|FK983603
EST:     GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAG                         ATGGCTCACAATGAAATCCAGATGGAAGAG
genomic: GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtg ... cattttgtagATGGCTCACAATGAAATCCAGATGGAAGAG
EST: gi|78082086|gb|DV510498.1|DV510498
EST:     GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAG                         ATGGCTCACAATGAAATCCAGATGGAAGAG
genomic: GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtg ... cattttgtagATGGCTCACAATGAAATCCAGATGGAAGAG
EST: gi|211083466|gb|FK983602.1|FK983602
EST:     GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAG                         ATGGCTCACAATG
genomic: GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtg ... cattttgtagATGGCTCACAATG
EST: gi|78076593|gb|DV505027.1|DV505027
EST:     GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAG                         ATGGCTCACAATGAAATCCAGATGGAAGAG
genomic: GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtg ... cattttgtagATGGCTCACAATGAAATCCAGATGGAAGAG
EST: gi|93015877|gb|EB641397.1|EB641397
EST:     GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAG                         ATGGCTCACAATGAAATCCAGATGGAAGAG
genomic: GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtg ... cattttgtagATGGCTCACAATGAAATCCAGATGGAAGAG
EST: gi|37420223|gb|CF647800.1|CF647800
EST:     GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAG                         ATGGCTCACAATGAAATCCAGATGGAAGAG
genomic: GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtg ... cattttgtagATGGCTCACAATGAAATCCAGATGGAAGAG
EST: gi|71439017|gb|DR820067.1|DR820067
EST:     GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAG                         ATGGCTCACAATGAAATCCAGATGGAAGAG
genomic: GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtg ... cattttgtagATGGCTCACAATGAAATCCAGATGGAAGAG
EST: gi|71426297|gb|DR807347.1|DR807347
EST:     GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAG                         ATGGCTCACAATGAAATCCAGATGGAAGAG
genomic: GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtg ... cattttgtagATGGCTCACAATGAAATCCAGATGGAAGAG
EST: gi|50333020|gb|CO528146.1|CO528146
EST:     GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAG                         ATGGCTCACAATGAAATCCAGATGGAAGAG
genomic: GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtg ... cattttgtagATGGCTCACAATGAAATCCAGATGGAAGAG
EST: gi|148973073|gb|EE024135.2|EE024135
EST:     GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAG                         ATGGCTCACAATGAAATCCAGATGGAAGAG
genomic: GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtg ... cattttgtagATGGCTCACAATGAAATCCAGATGGAAGAG
EST: gi|50329341|gb|CO524467.1|CO524467
EST:     GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAG                         ATGGCTCACAATGAAATCCAGATGGAAGAG
genomic: GGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtg ... cattttgtagATGGCTCACAATGAAATCCAGATGGAAGAG