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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCCAAGAGGTTCGAGATCAAGTCCGGCCAGCAGAGCAGTGTCCTCGGCGCTTTGCTCGCCATCCCCCTCCGCCTCGGCACCGGCGTCTTCGTCCTCGGgtacgcaccgcgccgcgccttctctcaccatccgcgcgtctacgtcgtctacaactctacacctgctgacctgcacgtgtcacatcgatgtgcag

Basic information

species Zea mays
transcript GRMZM2G085000_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G085000_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g44400.3 (Oryza sativa), 5'ss of exon 1
AGCCCAAGAGGTTCGAGATCAAGTCCGGCCAGCAGAGCAGTGTCCTCGGCGCTTTGCTCGCCATCCCCCTCCGCCTCGGCACCGGCGTCTTCGTCCTCGGgtacgcaccgcgccgcgccttctctcaccatccgcgcgtctacgtcgtctacaactctacacctgctgacctgcacgtgtcacatcgatgtgcag-----------------------
|||||||||  |||||| | ||| ||||||||     |    || ||  ||| |  |||||||| ||| |||||||||||||||||||||||| ||| ||||||        |     || ||      || ||  |   ||| |  |  |      | |     || |     ||  |   |||  ||     |                       
AGCCCAAGACCTTCGAGGTGAAGCCCGGCCAGTCCGACGACATCGTCACCGCCTCCCTCGCCATTCCCTTCCGCCTCGGCACCGGCGTCTTCGCCCTTGGgtactttattttctatttctactgaatttattcgatccaatacctactgaattttgtttctaaatcttattgttactcgattcatatattcatggccttggattcatttgatgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60343918|gb|DN210891.1|DN210891
EST:     GCCTCGGCACCGGCGTCTTCGTCCTCGG                         GTACTCGCCATCACTTGTTTCTCCATCAGAGATACCATCGGACCAATATGC
genomic: GCCTCGGCACCGGCGTCTTCGTCCTCGGgtacgcaccg ... cgatgtgcagGTACTCGCCATCACTTGTTTCTCCATCAGAGATACCATCGGACCAATATGC
EST: gi|60394591|gb|DN227461.1|DN227461
EST:     CGCCTCGGCACCGGCGTCTTCGTCCTCGG                         GTACTCGCCATCACTTGTTTCTCCATCAGAGATACCATCGGACCAATATGC
genomic: CGCCTCGGCACCGGCGTCTTCGTCCTCGGgtacgcaccg ... cgatgtgcagGTACTCGCCATCACTTGTTTCTCCATCAGAGATACCATCGGACCAATATGC