1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGTCGCCGCCGGCTGGCCCGCCTGGCTCTCCGCCGTCGCCGGCGAGGCCATTGACGGATGGACCCCGCGCCGCGCCGACTCCTTCGAGAAGATTGACAAGgtacgtccgcgcgcccttccattgtccctttctccctctcgcggttcgtggtgccgccattgggagctgacaaaagctttgtttgcatctctctgggctgcgccgcctggcag
species | Zea mays |
transcript | GRMZM2G084347_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGACGGATGGACCCCGCGCCGCGCCGACTCCTTCGAGAAGATTGACAAG ATCGGCCAGGGCACGTACAGCAACGTGTACAAGGCGCGCGACACGGTGAGCEST: gi|71332959|gb|DR803508.1|DR803508
genomic: TTGACGGATGGACCCCGCGCCGCGCCGACTCCTTCGAGAAGATTGACAAGgtacgtccgc ... cgcctggcagATCGGCCAGGGCACGTACAGCAACGTGTACAAGGCGCGCGACACGGTGAGC
EST: TTGACGGATGGACCCCGCGCCGCGCCGACTCCTTCGAGAAGATTGACAAG ATCGGCCAGGGCACGTACAGCAACGTGTACAAGGCGCGCGACACGGTGAGCEST: gi|71448168|gb|DR829218.1|DR829218
genomic: TTGACGGATGGACCCCGCGCCGCGCCGACTCCTTCGAGAAGATTGACAAGgtacgtccgc ... cgcctggcagATCGGCCAGGGCACGTACAGCAACGTGTACAAGGCGCGCGACACGGTGAGC
EST: TTGACGGATGGACCCCGCGCCGCGCCGACTCCTTCGAGAAGATTGACAAG ATCGGCCAGGGCACGTACAGCAACGTGTACAAGGCGCGCGACACGGTGAGC
genomic: TTGACGGATGGACCCCGCGCCGCGCCGACTCCTTCGAGAAGATTGACAAGgtacgtccgc ... cgcctggcagATCGGCCAGGGCACGTACAGCAACGTGTACAAGGCGCGCGACACGGTGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCGCCGCCGGCTGGCCCGCCTGGCTCTCCGCCGTCGCCGGCGAGGCCATTGACGGATGGACCCCGCGCCGCGCCGACTCCTTCGAGAAGATTGACAAGgtacgtccgcgcgcccttccattgtccctttctccctctcgcggttcgtggtgccgccattgggagctgacaaaagctttgtttgcatctctctgggctgcgccgcctggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA