1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGAGGTCGATGCCGCCGTCTACCCGCTGCCCAAGGGCAAGGTCAAACTCACGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACGgtgcgtccctttcccttttccttcctccatcttcttgatctatttagccttatttacacgtgccagctcatggatgcccagatcttgcaattgtagaagg...
species | Zea mays |
transcript | GRMZM2G083836_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACG ATTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAGGEST: gi|211302663|gb|FL025361.1|FL025361
genomic: CGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACGgtgcgtccct ... attgttgcagATTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAGG
EST: GCTCGAGAAGCCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACG AATTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAGEST: gi|148930481|gb|EE285036.2|EE285036
genomic: GCTCGAGAAGC-TCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACGgtgcgtccct ... attgttgcagA-TTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAG
EST: CGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACG ATTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAGGEST: gi|14191093|gb|BG833323.1|BG833323
genomic: CGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACGgtgcgtccct ... attgttgcagATTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAGG
EST: CGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACG ATTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAGGEST: gi|19770501|gb|BQ035222.1|BQ035222
genomic: CGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACGgtgcgtccct ... attgttgcagATTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAGG
EST: CGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACG ATTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAGGEST: gi|20300468|gb|BQ163411.1|BQ163411
genomic: CGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACGgtgcgtccct ... attgttgcagATTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAGG
EST: CGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACG ATTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAGGEST: gi|211302664|gb|FL025362.1|FL025362
genomic: CGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACGgtgcgtccct ... attgttgcagATTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAGG
EST: CGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACG ATTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAGGEST: gi|148983061|gb|EE028971.2|EE028971
genomic: CGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACGgtgcgtccct ... attgttgcagATTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAGG
EST: CGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACG ATTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAGGEST: gi|16816909|gb|BM056095.1|BM056095
genomic: CGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACGgtgcgtccct ... attgttgcagATTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAGG
EST: CGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACG ATTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAGG
genomic: CGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACGgtgcgtccct ... attgttgcagATTGGAGCGGTTGCTAGGATTAGGCACCAGTTAGCCTATGCATCACACAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGGTCGATGCCGCCGTCTACCCGCTGCCCAAGGGCAAGGTCAAACTCACGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACGgtgcgtccctttcccttttccttcctccatcttcttgatctatttagccttatttacacgtgccagctcatggatgcccagatcttgcaattgtagaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA