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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTCTGCCTCCTGAGGTGCTGAACGACAGCTCTGCTACTTCTGATCTGCATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactgcatccctttcttgttatctttccctagctaccgcgctctgagttctcttcaatttggttcttccatgtatgaattcatgtctgcaattaaccacaaaattgaacag

Basic information

species Zea mays
transcript GRMZM2G083749_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211051350|gb|FK945215.1|FK945215
EST:     CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT                         TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: gi|211077489|gb|FL419989.1|FL419989
EST:     CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT                         TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: gi|91874519|gb|EB404476.1|EB404476
EST:     CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT                         TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: gi|78115486|gb|DV533874.1|DV533874
EST:     CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT                         TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: gi|101386436|gb|EB815235.1|EB815235
EST:     CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT                         TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: gi|211434382|gb|FL408927.1|FL408927
EST:     CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT                         TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: gi|149055404|gb|EE156323.2|EE156323
EST:     CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT                         TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: gi|211084381|gb|FL369930.1|FL369930
EST:     CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT                         TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: gi|50339291|gb|CO534417.1|CO534417
EST:     CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT                         TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: gi|94472188|gb|EB701146.1|EB701146
EST:     CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT                         TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: gi|148932563|gb|EC876392.2|EC876392
EST:     CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT                         TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: gi|148981124|gb|EE027442.2|EE027442
EST:     CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT                         TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: gi|149095094|gb|EE180702.2|EE180702
EST:     CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT                         TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCCTCTGCCTCCTGAGGTGCTGAACGACAGCTCTGCTACTTCTGATCTGCATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactgcatccctttcttgttatctttccctagctaccgcgctctgagttctcttcaatttggttcttccatgtatgaattcatgtctgcaattaaccacaaaattgaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT