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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTCCATGTACAATGCAGAGAAGAGGGGCAAGAGGCAGGTCATGATCAGGCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctcaatctcgtgccccatttcaattggcagcattccgaggatacgtacctgattagtgctatattattag

Basic information

species Zea mays
transcript GRMZM2G083497_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G083497_T04 (Zea mays), 5'ss of exon 1
lower sequence: AT3G46040.1 (Arabidopsis thaliana), 5'ss of exon 2
AAGTCCATGTACAATGCAGAGAAGAGGGGCAAGAGGCAGGTCATGATCAGGCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctcaatctcgt---gccccatttcaattggcagcattccgaggatacgtacctgattagtgctatattattag
|||   |||||||||||||||||||| || ||||||||||| ||||||||||| || || || || |||||||||||||| |  ||||||||    || |||  | |   ||  | |    ||     ||  |||  | | || | |     | ||       |  | ||   || ||||
AAGAGTATGTACAATGCAGAGAAGAGAGGAAAGAGGCAGGTTATGATCAGGCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACGgtatgctagtaactttgcagagctagcgtttgattc-ctgtatacagttttcaagtgtaatgatgcttcttggtttttag

upper sequence: GRMZM2G083497_T04 (Zea mays), 5'ss of exon 1
lower sequence: AT1G07770.1 (Arabidopsis thaliana), 5'ss of exon 2
AAGTCCATGTACAATGCAGAGAAGAGGGGCAAGAGGCAGGTCATGATCAGGCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctcaatctcgtgccccatttcaattggcagc-attccgaggatacgtacctgattagtgctatattattag------------------
|||  |||||||||||| |||||  | |||||||||||||||||||||||||| || ||||| ||||| |||||||| ||||  |||||||||   || |||  |     | | ||   ||  |||| |  |   ||  ||||| | ||| |     || |      || |||||  |                  
AAGAGCATGTACAATGCTGAGAAACGAGGCAAGAGGCAGGTCATGATCAGGCCTTCCTCCAAAGTGATTATCAAGTTTCTGATTGTCATGCAGAAGCACGgtatg-----attatcccaccagattttatataatagagattcctaagattctcggatgttgttccttaaattatgtggttaccaatcaaatgcag

upper sequence: GRMZM2G083497_T04 (Zea mays), 5'ss of exon 1
lower sequence: AT5G59850.1 (Arabidopsis thaliana), 5'ss of exon 2
AAGTCCATGTACAATGCAGAGAAGAGGGGCAAGAGGCAGGTCATGATCAGGCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgt----tagttctcaatctcgtgccccattt---caattggcagcattccgaggatacgtacctgattag-tgctatattattag--------------
|||   ||||||||||| |||||||| || |||||||| |||||||||||||| || || || |||||||||||||| || |  |||||||||   || |||    |  | ||  ||    |  | |||||   || || | |  |  |   |  |  ||   |||| |  || | ||  |||                
AAGAGTATGTACAATGCTGAGAAGAGAGGGAAGAGGCAAGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACGgtatgttgatcctgcattgtttagctcattttcacattttgtaataacctt-gattctgtgtttgatcaactgttttaacatttttgatgaaactgcag

upper sequence: GRMZM2G083497_T04 (Zea mays), 5'ss of exon 1
lower sequence: EFJ14550 (Selaginella moellendorffii), 5'ss of exon 1
AAGTCCATGTACAATGCAGAGAAGAGGGGCAAGAGGCAGGTCATGATCAGGCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctcaatctcgtgccccatttcaattggcagcattccgaggatacgtacctgattagtgctatattattag
||| ||||||||||||| |||||| | |||||| | |||||| ||||| | || ||||| || ||||||||||| |||||  | || |||||    || ||| || |||   || ||    || |||   |||    | |          || | | |                   
AAGACCATGTACAATGCGGAGAAGCGTGGCAAGCGCCAGGTCTTGATCCGCCCCTCGTCGAAAGTGATCATCAAATTCCTCGCTGTGATGCAAAAGCACGgtaagatct---tcgcgaattcctttttggttg-tttcttcatcctctcgcgcatcag-------------------

upper sequence: GRMZM2G083497_T04 (Zea mays), 5'ss of exon 1
lower sequence: EFJ26253 (Selaginella moellendorffii), 5'ss of exon 1
AAGTCCATGTACAATGCAGAGAAGAGGGGCAAGAGGCAGGTCATGATCAGGCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctcaatctcgtgccccatttcaattggcagcattccgaggatacgtacctgattagtgctatattattag
||| ||||||||||||| |||||| | |||||| | |||||| ||||| | || ||||| || ||||||||||| |||||  | || |||||    || ||| || |||   || ||    || |||    | |   | |        | || | | |                   
AAGACCATGTACAATGCGGAGAAGCGTGGCAAGCGCCAGGTCTTGATCCGCCCCTCGTCGAAAGTGATCATCAAATTCCTCGCCGTGATGCAAAAGCACGgtaagatct---tcgcgaattccttttgg--tcgtttcttcatccttttgcgcatcag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211287849|gb|FL261562.1|FL261562
EST:     GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATG                         GATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
genomic: GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctc ... atattattagGATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
EST: gi|211289986|gb|FL261571.1|FL261571
EST:     GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATG                         GATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTCGGAAGATTG
genomic: GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctc ... atattattagGATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
EST: gi|211294273|gb|FL261606.1|FL261606
EST:     GCCGTCGTCSAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATG                         GATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
genomic: GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctc ... atattattagGATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
EST: gi|45847067|gb|CN071010.1|CN071010
EST:     GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATG                         GATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
genomic: GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctc ... atattattagGATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
EST: gi|211294277|gb|FL261610.1|FL261610
EST:     CCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATTG                         GATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATT
genomic: CCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCA-TGgttagttctc ... atattattagGATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATT
EST: gi|211296414|gb|FL261620.1|FL261620
EST:     GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATG                         GATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
genomic: GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctc ... atattattagGATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
EST: gi|211164278|gb|FL261545.1|FL261545
EST:     GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATG                         GATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
genomic: GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctc ... atattattagGATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
EST: gi|18384016|gb|BM417216.1|BM417216
EST:     GCAGCGTCATG                         GATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
genomic: GCAGCGTCATGgttagttctc ... atattattagGATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
EST: gi|211292125|gb|FL261586.1|FL261586
EST:     GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATG                         GATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
genomic: GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctc ... atattattagGATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
EST: gi|211294276|gb|FL261609.1|FL261609
EST:     GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATG                         GATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
genomic: GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctc ... atattattagGATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
EST: gi|211164281|gb|FL261548.1|FL261548
EST:     GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATG                         GATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
genomic: GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctc ... atattattagGATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
EST: gi|15426763|gb|BI542585.1|BI542585
EST:     GCCGTCGTCCAAGG-GATCATCAAGTTCCTGACGGTCATGCAGCGTCATG                         GATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
genomic: GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctc ... atattattagGATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
EST: gi|211164272|gb|FL261539.1|FL261539
EST:     GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATG                         GATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
genomic: GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctc ... atattattagGATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
EST: gi|211289991|gb|FL261576.1|FL261576
EST:     GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATG                         GATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
genomic: GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctc ... atattattagGATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
EST: gi|211164280|gb|FL261547.1|FL261547
EST:     GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATG                         GATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG
genomic: GCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctc ... atattattagGATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTG