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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCACCGCCACCTCTCCGGGCTCGAGGAGGCCGTTCTCAAGAACATCGACGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctgcttcgcgtgcgccttcttcgttgcgcgggttgtgggctcgggtggtggctactagagtgagagaggaccaggagcgaggagagcgtgctc...

Basic information

species Zea mays
transcript GRMZM2G083095_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G083095_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g59020.1 (Oryza sativa), 5'ss of exon 1
GGCCACCGCCACCTCTCCGGGCTCGAGGAGGCCGTTCTCAAGAACATCGACGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctgcttcgcgtgcgccttcttcgttgcgcgggttgtgggctcgggtggtggctactagagtgagagaggaccaggagcgaggagagcgtgctc---
|| |||   ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||| ||||||||| ||  |||| |   | |||||  || |  | |    |  | ||  | ||   ||   | || |  |||| |    ||| | ||    | |        
GGGCACAAGCACCTCTCCGGCCTCGATGAGGCCGTCCTCAAGAACATCGACGCCTGCCGCGAGCTCTCCGCCATCACCCGCACCTCCCTCGGCCCCAACGgtgaggcccccttccct--ctccttccccgctctgtgctccggcgtcttcgttgcccgcgttttga-tccgagaagtttgggatctagcgatgtgccacggcg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211342372|gb|FL217845.1|FL217845
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|148995430|gb|EE034628.2|EE034628
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|71431587|gb|DR812637.1|DR812637
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|211342365|gb|FL217838.1|FL217838
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|211339980|gb|FL217830.1|FL217830
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|148987524|gb|EE031386.2|EE031386
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|211342368|gb|FL217841.1|FL217841
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|211339979|gb|FL217829.1|FL217829
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|148932523|gb|EC876316.2|EC876316
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|211339977|gb|FL217827.1|FL217827
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|211342367|gb|FL217840.1|FL217840
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|211342369|gb|FL217842.1|FL217842
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|149105115|gb|EE290598.2|EE290598
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|211339978|gb|FL217828.1|FL217828
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|22935567|gb|BU571842.1|BU571842
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|211342371|gb|FL217844.1|FL217844
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|149015148|gb|EE044917.2|EE044917
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|211339982|gb|FL217832.1|FL217832
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: gi|148978584|gb|EE026233.2|EE026233
EST:     CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACG                         GAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTGTCCGCCATTACGCGCACCTCTCTCGGCCCGAACGgtgagtcctg ... ctttttgtagGAATGAACAAAATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG