1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CACGAGACGCCCCTCTGCTTCCTTTTCTCTGTCGCTCAAAAGTTGCTGGAGCCCTCTTCTCTCTCTCCTCTCCGAGCCCCAACCATGGATGAGGCGCAAGgtacgtgtctctctctctcttatcgtgatcgtgctcctgtgcctctctccctggctccaattccaggtccgttctcggttctgtttcgagggaccaggat...
species | Zea mays |
transcript | GRMZM2G082924_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AACCATGGATGAGGCGCAAG TTATGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGCTCEST: gi|24462578|gb|BM660109.1|BM660109
genomic: AACCATGGATGAGGCGCAAGgtacgtgtct ... tgtactgcagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGTTGCTC
EST: TCTCCTCTCCGAGCCCCAACCATGGATGAGGCGCAAG TTATGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGCTCEST: gi|15632335|gb|BI679428.1|BI679428
genomic: TCTCCTCTCCGAGCCCCAACCATGGATGAGGCGCAAGgtacgtgtct ... tgtactgcagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGTTGCTC
EST: CGAGCCCCAACCATGGATGAGGCGCAAG TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGCTCEST: gi|44681911|gb|CK786959.1|CK786959
genomic: CGAGCCCCAACCATGGATGAGGCGCAAGgtacgtgtct ... tgtactgcagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGTTGCTC
EST: CGAGCCCCAACCATGGATGAGGCGCAAG TTATGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGCTC
genomic: CGAGCCCCAACCATGGATGAGGCGCAAGgtacgtgtct ... tgtactgcagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGTTGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACGAGACGCCCCTCTGCTTCCTTTTCTCTGTCGCTCAAAAGTTGCTGGAGCCCTCTTCTCTCTCTCCTCTCCGAGCCCCAACCATGGATGAGGCGCAAGgtacgtgtctctctctctcttatcgtgatcgtgctcctgtgcctctctccctggctccaattccaggtccgttctcggttctgtttcgagggaccaggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctctctc