1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTCGGCCCCTGGGTGGCGGCGCAGGGAGCCGTACCCGGCAGTCTCCGTAGTGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagttttccttctcctaacgaaatttgtttctctcttatttcttattacttaggaccaaatttgttggggattggagcggactgtaagccactgg...
species | Zea mays |
transcript | GRMZM2G082214_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAG GTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTTEST: gi|211366679|gb|FK959524.1|FK959524
genomic: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagtt ... aaaaaatcagGTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTT
EST: TGTCGAGCTCCCCGCAGTCTGTGCCAGGAGCTATAACTGTCGACACCGAG GTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTTEST: gi|101400862|gb|EB822128.1|EB822128
genomic: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagtt ... aaaaaatcagGTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTT
EST: TGTCCAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAG GTTGACACATTGCTACACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTTEST: gi|211366684|gb|FK959529.1|FK959529
genomic: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagtt ... aaaaaatcagGTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTT
EST: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAG GTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTTEST: gi|211366675|gb|FK959520.1|FK959520
genomic: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagtt ... aaaaaatcagGTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTT
EST: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAG GTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTTEST: gi|211369332|gb|FK959532.1|FK959532
genomic: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagtt ... aaaaaatcagGTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTT
EST: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAG GTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTTEST: gi|32935051|gb|CF039863.1|CF039863
genomic: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagtt ... aaaaaatcagGTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTT
EST: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAG GTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTTEST: gi|211366680|gb|FK959525.1|FK959525
genomic: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagtt ... aaaaaatcagGTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTT
EST: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAG GTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTTEST: gi|148987058|gb|EE030883.2|EE030883
genomic: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagtt ... aaaaaatcagGTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTT
EST: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAG GTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTTEST: gi|211366676|gb|FK959521.1|FK959521
genomic: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagtt ... aaaaaatcagGTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTT
EST: TGTCGAGCTCCCCGCAGTCTGTGCCAGGAGCTATAACTGTCGACACCGAG GTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTTEST: gi|211366678|gb|FK959523.1|FK959523
genomic: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagtt ... aaaaaatcagGTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTT
EST: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAG GTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTTEST: gi|211366685|gb|FK959530.1|FK959530
genomic: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagtt ... aaaaaatcagGTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTT
EST: TGTCGAGCTCCCCGCAGTCTGTGCCAGGAGCTATAACTGTCGACACCGAG GTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTTEST: gi|20811241|gb|BQ295719.1|BQ295719
genomic: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagtt ... aaaaaatcagGTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTT
EST: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAG GTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGTTGTTEST: gi|61118955|gb|DN559916.1|DN559916
genomic: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagtt ... aaaaaatcagGTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTT
EST: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACTGTCGACACCGAG GTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTTEST: gi|26457028|gb|CA828611.1|CA828611
genomic: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagtt ... aaaaaatcagGTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTT
EST: TCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAG GTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTTEST: gi|37425598|gb|CF650545.1|CF650545
genomic: TCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagtt ... aaaaaatcagGTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTT
EST: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAG GTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTT
genomic: TGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagtt ... aaaaaatcagGTTGACACATTGCTAGACAGTGTGAAGTGGGACAGCAAAGGGTTGGCTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGGCCCCTGGGTGGCGGCGCAGGGAGCCGTACCCGGCAGTCTCCGTAGTGTCGAGCTCCCCGCAGTCTGTGGCAGGAGCTATAACCGTCGACACCGAGgtttggagttttccttctcctaacgaaatttgtttctctcttatttcttattacttaggaccaaatttgttggggattggagcggactgtaagccactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctcc