1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCCTTTGCGAGCGATCGTGAGGGGATCGAGATGGCCTCAGCCTCACACCAATCCGAGCCCCTCGACTCCGCTGCCACCAGCGACACCGACGCCCCCTCAGgtgcggcacttgcctctgcctccccctcccgtcctctcttcatcctcctggtggctcggctctcccagtgttgctctgctcgtggtgtaaatagtggagg...
species | Zea mays |
transcript | GRMZM2G081924_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCCGAGCCCCTCGACTCCGCTGCCACCAGCGACACCGACGCCCCCTCAG ATAACATCCCAGAATTACCATGNNNNNNNTGTCATATCGTTACCAAACCTGEST: gi|211186638|gb|FL363946.1|FL363946
genomic: ATCCGAGCCCCTCGACTCCGCTGCCACCAGCGACACCGACGCCCCCTCAGgtgcggcact ... tctcttgcagATAACATCCCAGAATTACCATGCCCCCCCTGTCATATCGTTACCAAACCTG
EST: ATCCGAGCCCCTCGACTCCGCTGCCACCAGCGACACCGACGCCCCCTCAG ATAACATCCCAGAATTACCATGNNNNNNNTGTCATATCGTTACCAAACCTGEST: gi|211239881|gb|FL352730.1|FL352730
genomic: ATCCGAGCCCCTCGACTCCGCTGCCACCAGCGACACCGACGCCCCCTCAGgtgcggcact ... tctcttgcagATAACATCCCAGAATTACCATGCCCCCCCTGTCATATCGTTACCAAACCTG
EST: ATCCGAGCCCCTCGACTCCGCTGCCACCAGCGACACCGACGCCCCCTCAG ATAACATCCCAGAATTACCATGNNNNNNNTGTCATATCGTTACCAAACCTGEST: gi|211183810|gb|FL343288.1|FL343288
genomic: ATCCGAGCCCCTCGACTCCGCTGCCACCAGCGACACCGACGCCCCCTCAGgtgcggcact ... tctcttgcagATAACATCCCAGAATTACCATGCCCCCCCTGTCATATCGTTACCAAACCTG
EST: TCCGAGCCCCTCGACTCCGCTGCCACCAGCGACACCGACGCCCCCMTCAG ATAACATCCCAGATTTACCATGCCCCMCCTATCATATCGTTACCAAACCTEST: gi|76292398|gb|DV031966.1|DV031966
genomic: TCCGAGCCCCTCGACTCCGCTGCCACCAGCGACACCGACGCCCCC-TCAGgtgcggcact ... tctcttgcagATAACATCCCAGAATTACCATGCCCCCCCTGTCATATCGTTACCAAACCT
EST: ATCCGAGCCCCTCGACTCCGCTGCCACCAGCGACACCGACGCCCCCTCAG ATAACATCCCAGAATTACCATGNNNNNNNTGTCATATCGTTACCAAACCTGEST: gi|211304701|gb|FL367389.1|FL367389
genomic: ATCCGAGCCCCTCGACTCCGCTGCCACCAGCGACACCGACGCCCCCTCAGgtgcggcact ... tctcttgcagATAACATCCCAGAATTACCATGCCCCCCCTGTCATATCGTTACCAAACCTG
EST: ATCCGAGCCCCTCGACTCCGCTGCCACCAGCGACACCGACGCCCCCTCAG ATAACATCCCAGAATTACCATGNNNNNNNTGTCATATCGTTACCAAACCTG
genomic: ATCCGAGCCCCTCGACTCCGCTGCCACCAGCGACACCGACGCCCCCTCAGgtgcggcact ... tctcttgcagATAACATCCCAGAATTACCATGCCCCCCCTGTCATATCGTTACCAAACCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTTTGCGAGCGATCGTGAGGGGATCGAGATGGCCTCAGCCTCACACCAATCCGAGCCCCTCGACTCCGCTGCCACCAGCGACACCGACGCCCCCTCAGgtgcggcacttgcctctgcctccccctcccgtcctctcttcatcctcctggtggctcggctctcccagtgttgctctgctcgtggtgtaaatagtggagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcctcc