1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAGCTCAGTCCGATGGCGTTGAGCGGCAGAGCTCTGCTCTTGTTCAAGCTGCTGCTGCTGCTGCTGGCGTGCCTGCTCTTCCTCTTGGAGCTGTCCCGAGgtactcatgctgatggaagattcttctcttggtttcccagcagcttctgctttcttgcttccttcgtcttctggcattgcgcttgatgttcttttttttc...
species | Zea mays |
transcript | GRMZM2G081841_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTGCTGCTGCTGCTGGCGTGCCTCCTCTTCCTCTTGGAGCTGTCCCAAG GCAAGGAAGAAGCATTCAGCCTGAGGAACCTCCCGCCCTTCCACAAGGCCAEST: gi|91057027|gb|EB167445.1|EB167445
genomic: GCTGCTGCTGCTGCTGGCGTGCCTGCTCTTCCTCTTGGAGCTGTCCCGAGgtactcatgc ... tctgtcgcagGCAAGGAAGAAGCATTCAGCCTGAGGAACCTCCCGCCCTTCCACAAGGCCA
EST: GCGTGCCTGCTCTTCCTCTTGGAGCTGTCCCGAG GCAAGGAAGAAGCATTCAGCCTGAGGAACCTCCCGCCCTTCCACAAGGCCA
genomic: GCGTGCCTGCTCTTCCTCTTGGAGCTGTCCCGAGgtactcatgc ... tctgtcgcagGCAAGGAAGAAGCATTCAGCCTGAGGAACCTCCCGCCCTTCCACAAGGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCTCAGTCCGATGGCGTTGAGCGGCAGAGCTCTGCTCTTGTTCAAGCTGCTGCTGCTGCTGCTGGCGTGCCTGCTCTTCCTCTTGGAGCTGTCCCGAGgtactcatgctgatggaagattcttctcttggtttcccagcagcttctgctttcttgcttccttcgtcttctggcattgcgcttgatgttcttttttttc
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT