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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTCTGTTCAACCACCCGCCGAGTTCAGCAGCACTCTCCTCCGCCCTCTTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatccccttttaaggtttgctcgggttcctcttcctgctgcgattcatcccgttcttgccgtctacggttcaccccgttcgtccatcgcagatttgtccatatcagactttttttcccgctgctgtttttgagtcagaccgcgcgtgctgaattgtgttctcag

Basic information

species Zea mays
transcript GRMZM2G081682_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211316223|gb|FL334911.1|FL334911
EST:     TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG                         GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: gi|211075605|gb|FL344132.1|FL344132
EST:     TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG                         GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: gi|211288683|gb|FL312634.1|FL312634
EST:     TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCG                         GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: gi|211328969|gb|FL341564.1|FL341564
EST:     TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG                         GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: gi|71426924|gb|DR807974.1|DR807974
EST:     TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCG                         GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: gi|211416745|gb|FL321410.1|FL321410
EST:     TCCAGGTCCAGCAGAGATTGGGGGCCGCGTGGGCATCGGAGATTGCCTCG                         GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
genomic: TCCAGGTCCAGCAAAGATT-GGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: gi|74245361|gb|DT653275.1|DT653275
EST:     TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCG                         GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: gi|74232804|gb|DT640718.1|DT640718
EST:     CAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCG                         GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
genomic: CAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: gi|211420503|gb|FL364960.1|FL364960
EST:     TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG                         GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: gi|211457434|gb|FL331063.1|FL331063
EST:     TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG                         GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: gi|32866060|gb|CF005742.1|CF005742
EST:     TTCCAGGTCCAGCAGAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCG                         GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: gi|32909379|gb|CF014191.1|CF014191
EST:     TTCCAGGTCCAGCAGAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCG                         GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: gi|211310239|gb|FL338849.1|FL338849
EST:     TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG                         GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: gi|211149448|gb|FL325049.1|FL325049
EST:     TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG                         GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: gi|211140891|gb|FL328471.1|FL328471
EST:     TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG                         GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: gi|211320715|gb|FL358326.1|FL358326
EST:     TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG                         GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACTCTGTTCAACCACCCGCCGAGTTCAGCAGCACTCTCCTCCGCCCTCTTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatccccttttaaggtttgctcgggttcctcttcctgctgcgattcatcccgttcttgccgtctacggttcaccccgttcgtccatcgcagatttgtccatatcagactttttttcccgctgctgtttttgagtcagaccgcgcgtgctgaattgtgttctcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT