1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGGCCCGCTCCGCCAGATCTTCGTCGAGTTCCTCGAGCGCTCCTGCACCGCCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGgttccttcctgctcctttcttcgtgcatttcctcgaccgcctggtgggcgtgtgtgctgatgccctgctttttcctctgcag
species | Zea mays |
transcript | GRMZM2G081462_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAG AAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGEST: gi|149097284|gb|EE183107.2|EE183107
genomic: CCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGgttccttcct ... tcctctgcagAAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAG
EST: CCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAG AAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGEST: gi|84969707|gb|DW468136.1|DW468136
genomic: CCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGgttccttcct ... tcctctgcagAAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAG
EST: CCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAG AAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGEST: gi|76016942|gb|DT944112.1|DT944112
genomic: CCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGgttccttcct ... tcctctgcagAAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAG
EST: CCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAG AAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGEST: gi|15323476|gb|BI478494.1|BI478494
genomic: CCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGgttccttcct ... tcctctgcagAAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAG
EST: CCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAG AAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGEST: gi|211408498|gb|FL069298.1|FL069298
genomic: CCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGgttccttcct ... tcctctgcagAAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAG
EST: CCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAG AAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGEST: gi|50325243|gb|CO520369.1|CO520369
genomic: CCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGgttccttcct ... tcctctgcagAAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAG
EST: CCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAG AAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGEST: gi|78107168|gb|DV525586.1|DV525586
genomic: CCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGgttccttcct ... tcctctgcagAAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAG
EST: CCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAG AAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAG
genomic: CCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGgttccttcct ... tcctctgcagAAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCCCGCTCCGCCAGATCTTCGTCGAGTTCCTCGAGCGCTCCTGCACCGCCGAGTTCTCCGGCTTCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGgttccttcctgctcctttcttcgtgcatttcctcgaccgcctggtgggcgtgtgtgctgatgccctgctttttcctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT