Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGGCTCCGGGCCGGCGCCCAACGCCGCGCACACCGCGGAAGAGGTCTTCCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctctgcacgctctgccgattgggctcctgattctgtcccggctgcgtggattcgtgcgattgatgcgggggttttctcttatgctgtgcag

Basic information

species Zea mays
transcript GRMZM2G080917_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G080917_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g66420.1 (Oryza sativa), 5'ss of exon 1
GGGGGCTCCGGGCCGGCGCCCAACGCCGCGCACACCGCGGAAGAGGTCTTCCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctc-tgcacgctctgccgattgggctcctgattctgtcccggctgcgtggattcgtgcgattgatgcgggggttttctcttatgctgtgcag
|| |||   ||   ||| ||  ||||| ||| ||| ||||| |||||||||||||||  |   | |||||||||||||||||||||||| ||||||||||||||||| |  || |||||   |  ||     || ||||        ||  || ||||||||| || |||   |  |||| | | || ||| |     
GGAGGCGGAGGCGGGGCACCGTACGCCACGCGCACGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACCGgtacgccgcgcgcgcgctccctccctta----cccgatttctcagtcgccccgcggattcgtgtgactga---gctggttgtttgttttgcag-----

upper sequence: GRMZM2G080917_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv12s0035g01980.t01 (Vitis vinifera), 5'ss of exon 1
--GGGGGCTCCGGGCCGGCGCCCAACGCCGCGCACACCGCGGAAGAGGTCTTCCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcct-ctgcacgctctgccgat---tgggctcctgattctgtcccggctgcgtggattcgtgc---gattgatgcgggggttttctcttatgctgtgcag-------------------
  || ||  | |   |  | |||    ||  | ||   |  |||||||||||| |||| |||| || | | || |||||| |||||||||| |||||||||||| ||  | ||     |||||   ||   |  ||   || || | |   |  |   ||  ||  | |   | ||  | ||    ||     || || ||    |                   
ATGGAGGGACTGCCACCACACCCGGTACCCAGAAC--TGTTGAAGAGGTCTTCAGCGATTACAGAGGCAGACGTGCCGGCTTGATCAAGGCCCTCACCACCGgttcgtttgctctcttctctgtgtatatatatgcatatggttttctgttgtttttttgtgttttttccttgttttgttcgtattttgatgattttgttgaatgggtgtttgtgggtattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60356472|gb|DN223445.1|DN223445
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211520810|gb|FL147604.1|FL147604
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211520816|gb|FL147610.1|FL147610
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|148945591|gb|EC890845.2|EC890845
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211520809|gb|FL147603.1|FL147603
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211455959|gb|FL147587.1|FL147587
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211455961|gb|FL147589.1|FL147589
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211455967|gb|FL147595.1|FL147595
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211520807|gb|FL147601.1|FL147601
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211520803|gb|FL147597.1|FL147597
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211523805|gb|FL147613.1|FL147613
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|148997618|gb|EE035837.2|EE035837
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211455963|gb|FL147591.1|FL147591
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211520815|gb|FL147609.1|FL147609
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|50326049|gb|CO521175.1|CO521175
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211520805|gb|FL147599.1|FL147599
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211455964|gb|FL147592.1|FL147592
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211455965|gb|FL147593.1|FL147593
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211520813|gb|FL147607.1|FL147607
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|78106946|gb|DV525364.1|DV525364
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211520814|gb|FL147608.1|FL147608
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211520811|gb|FL147605.1|FL147605
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211455962|gb|FL147590.1|FL147590
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211520806|gb|FL147600.1|FL147600
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGA-GGTTCTTCAAGCTCTGTGACCCCG
EST: gi|211520808|gb|FL147602.1|FL147602
EST:     CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCG                         ATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG
genomic: CCGCGACTACAAAGCCCGCCGCGCCGGCATGATCAAGGCACTCACCACCGgtacgcctct ... tgctgtgcagATGTGGAGAGGTTCTTCAAGCTCTGTGACCCCG