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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTTTTTATGTTTCACTGATCACTGATGTCGTCGATCTGCAGACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattcttcttcttcttctcgtctcgtgcttccatctcactatttccattccaacttgatccttatccatccagacacggatgttcgttccaaagctgacctttctccccgccacgtgttcttcctcccag

Basic information

species Zea mays
transcript GRMZM2G080375_T06
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G080375_T06 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 5'ss of exon 2
TTTTTTTTATGTTTCACTGATCACTGATGTCGTCGATCTGCAGACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattcttcttcttcttctcgtctcgtgcttccatctcactatttccattccaacttgatccttatcca-tccagacacggatgttcgttccaaagctgacctttctccccgccacgtgttcttcctcccag--------
                                           || |||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| ||    | |||| |    |   |  ||  || |   |||||   || |  ||  ||    | ||||  ||||  || |      || ||| |||||||| | | |||||||| || | ||            
-------------------------------------------ACTTACCCGAATCCTCTGCAAGACAACCCGGCTTATTCAGTCGTCAAgtaagaattctcct----cgtctcctgctctaaattaattccatttgatccatgagaattccattattccatagtccaaccacgcttggt-acaaaaaggcttacctttcttcacaccacgtgtgctccttcttcttcttgcag