1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGCGAGTAAGTGGGCGACGAAGAAGAAGCTGGTGGGCGGCGACGCCGGCTACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcgagagtcccccatcctcttggtgtgtcacgttgggttcctgacggttagttcccggcgtgaactggaaagttccttcttttttttttcgttc...
species | Zea mays |
transcript | GRMZM2G080375_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCG ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAEST: gi|211522284|gb|FL320492.1|FL320492
genomic: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcga ... cgatctgcagACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
EST: ACGTGCTCGAGGACGTACCGCACCTCACGGATTACATGCCCCAGCTCCCG ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAEST: gi|148940563|gb|EC885365.2|EC885365
genomic: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcga ... cgatctgcagACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
EST: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCG ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAEST: gi|211143668|gb|FL321938.1|FL321938
genomic: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcga ... cgatctgcagACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
EST: ACGTGCTCGAGGACGTACCGCACCTCACGGATTACATGCCCCAGCTCCCG ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAEST: gi|149076118|gb|EE164702.2|EE164702
genomic: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcga ... cgatctgcagACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
EST: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCG ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAEST: gi|148941151|gb|EC886025.2|EC886025
genomic: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcga ... cgatctgcagACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
EST: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCG ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAEST: gi|18661967|gb|BM501673.1|BM501673
genomic: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcga ... cgatctgcagACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
EST: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCG ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAEST: gi|76914829|gb|DV165709.1|DV165709
genomic: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcga ... cgatctgcagACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
EST: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCG ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAEST: gi|37416938|gb|CF646120.1|CF646120
genomic: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcga ... cgatctgcagACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
EST: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCG ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAEST: gi|149087521|gb|EE176918.2|EE176918
genomic: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcga ... cgatctgcagACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
EST: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCG ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAEST: gi|76290797|gb|DV030365.1|DV030365
genomic: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcga ... cgatctgcagACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
EST: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCG ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAEST: gi|149069151|gb|EE157880.2|EE157880
genomic: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcga ... cgatctgcagACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
EST: ACCTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCG ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGGCAAEST: gi|149111238|gb|EE294735.2|EE294735
genomic: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcga ... cgatctgcagACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
EST: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCG ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAEST: gi|76913985|gb|DV165359.1|DV165359
genomic: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcga ... cgatctgcagACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
EST: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCG ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAEST: gi|78078027|gb|DV506442.1|DV506442
genomic: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcga ... cgatctgcagACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
EST: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCG ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAEST: gi|148935767|gb|EC879810.2|EC879810
genomic: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcga ... cgatctgcagACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
EST: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCG ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
genomic: ACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcga ... cgatctgcagACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGAGTAAGTGGGCGACGAAGAAGAAGCTGGTGGGCGGCGACGCCGGCTACGTGCTCGAGGACGTGCCGCACCTCACGGATTACATGCCCCAGCTCCCGgtgcgttcgagagtcccccatcctcttggtgtgtcacgttgggttcctgacggttagttcccggcgtgaactggaaagttccttcttttttttttcgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC