1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CTAATCCGTACAGAGCAACGCATCAAGTGATGGCGAAGCCGGAGGAGAAGCTGCGCTGCACCAAGGAACCCTTCATCGAGGACGTCGGCACCCGGAGGATgtaagcatgcggctcgcgtcccgtttaatgaatcgtagctcgacgattacacttactctgccgcttccctgttacgtttggttgcttttgatgtcag
species | Zea mays |
transcript | GRMZM2G080176_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGCGCTGCACCAAGGAACCCTTCATCGAGGACGTCGGCACCCGGAGGAT AAAGAGCATCCGGTTCAGCGTGCTCTCGGGCAGCGAGATTCGCAAGTCAGCEST: gi|211159635|gb|FL160662.1|FL160662
genomic: CTGCGCTGCACCAAGGAACCCTTCATCGAGGACGTCGGCACCCGGAGGATgtaagcatgc ... ttgatgtcagAAAGAGCATCCGGTTCAGCGTGCTCTCGGGCAGCGAGATTCGCAAGTCAGC
EST: CTGCGCTGCACCAAGGAACCCTTCATCGAGGACGTCGGCACCCGGAGGAT AAAGAGCATCCGGTTCAGCGTGCTCTCGGGCAGCGAGATTCGCAAGTCAGCEST: gi|86474903|gb|DY241273.1|DY241273
genomic: CTGCGCTGCACCAAGGAACCCTTCATCGAGGACGTCGGCACCCGGAGGATgtaagcatgc ... ttgatgtcagAAAGAGCATCCGGTTCAGCGTGCTCTCGGGCAGCGAGATTCGCAAGTCAGC
EST: CTGCGCTGCACCAAGGAACCCTTCATCGAGGACGTCGGCCCCCGGAGGAT AAAGAGCATCCGGTTCAGCGTGCTCTCGGGCAGCGAGATTCGCAAGTCAGC
genomic: CTGCGCTGCACCAAGGAACCCTTCATCGAGGACGTCGGCACCCGGAGGATgtaagcatgc ... ttgatgtcagAAAGAGCATCCGGTTCAGCGTGCTCTCGGGCAGCGAGATTCGCAAGTCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAATCCGTACAGAGCAACGCATCAAGTGATGGCGAAGCCGGAGGAGAAGCTGCGCTGCACCAAGGAACCCTTCATCGAGGACGTCGGCACCCGGAGGATgtaagcatgcggctcgcgtcccgtttaatgaatcgtagctcgacgattacacttactctgccgcttccctgttacgtttggttgcttttgatgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT