1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCAGGTCTCGTATCTCGTCATCAGGGACGACAACGGCAACGTCAAGCTCGATTGCCCGGCGATTGGCAAGCAGTTCGCAGCTGAGGAGATCTCCGCACAGgtttaacattaatttcgaatgtaatctgcagtacttctgttggttactttttactctgtttcatggattatgacagtgtctcagttaatcaattatctca...
species | Zea mays |
transcript | GRMZM2G079668_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATTGCCCGGCGATTGGCAAGCAGTTCGCAGCTGAGGAGATCTCCGCACAG GTGCTGAGAAAGCTGGTGGATGATGCATCAAAGTTTTTGAATGACAAGGTCEST: gi|149109009|gb|EE293094.2|EE293094
genomic: ATTGCCCGGCGATTGGCAAGCAGTTCGCAGCTGAGGAGATCTCCGCACAGgtttaacatt ... attcttgtagGTGCTGAGAAAGCTGGTGGATGATGCATCAAAGTTTTTGAATGACAAGGTC
EST: ATTGCCCGGCGATTGGCAAGCAGTTCGCAGCTGAGGAGATCTCCGCACAG GTGCTGAGAAAGCTGGTGGATGATGCATCAAAGTTTTTGAATGACAAGGTCEST: gi|71446645|gb|DR827695.1|DR827695
genomic: ATTGCCCGGCGATTGGCAAGCAGTTCGCAGCTGAGGAGATCTCCGCACAGgtttaacatt ... attcttgtagGTGCTGAGAAAGCTGGTGGATGATGCATCAAAGTTTTTGAATGACAAGGTC
EST: ATTGCCCGGCGATTGGCAAGCAGTTCGCAGCTGAGGAGATCTCCGCACAG GTGCTGAGAAAGCTGGTGGATGATGCATCAAAGTTTTTGAATGACAAGGTCEST: gi|18965171|gb|BM661431.1|BM661431
genomic: ATTGCCCGGCGATTGGCAAGCAGTTCGCAGCTGAGGAGATCTCCGCACAGgtttaacatt ... attcttgtagGTGCTGAGAAAGCTGGTGGATGATGCATCAAAGTTTTTGAATGACAAGGTC
EST: ATTGCCCGGCCATTGGCAAGCAGTTCGCAGCTGAGGAGATCTCCGCACAG GTGCTGAGAAAGCTGGTGGATGATGCATCAAAGEST: gi|87153250|gb|DY398039.1|DY398039
genomic: ATTGCCCGGCGATTGGCAAGCAGTTCGCAGCTGAGGAGATCTCCGCACAGgtttaacatt ... attcttgtagGTGCTGAGAAAGCTGGTGGATGATGCATCAAAG
EST: CAGCTGAGGAGATCTCCGCACAG GTGCTGAGAAAGCTGGTGGATGATGCATCAAAGTTTTTGAATGACAAGGTCEST: gi|71761337|gb|DR959274.1|DR959274
genomic: CAGCTGAGGAGATCTCCGCACAGgtttaacatt ... attcttgtagGTGCTGAGAAAGCTGGTGGATGATGCATCAAAGTTTTTGAATGACAAGGTC
EST: ATTGCCCGGCGATTGGCAAGCAGTTCGCAGCTGAGGAGATCTCCGCACAG GTGCTGAGAAAGCTGGTGGATGATGCATCAAAGTTTTTGAATGACAAGGTC
genomic: ATTGCCCGGCGATTGGCAAGCAGTTCGCAGCTGAGGAGATCTCCGCACAGgtttaacatt ... attcttgtagGTGCTGAGAAAGCTGGTGGATGATGCATCAAAGTTTTTGAATGACAAGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGGTCTCGTATCTCGTCATCAGGGACGACAACGGCAACGTCAAGCTCGATTGCCCGGCGATTGGCAAGCAGTTCGCAGCTGAGGAGATCTCCGCACAGgtttaacattaatttcgaatgtaatctgcagtacttctgttggttactttttactctgtttcatggattatgacagtgtctcagttaatcaattatctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC