1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATTCGACACGGACTCAGACCCTCACACGCCTCCTCACCGGCTCACGACGTCGCCACCTCAGATCCGGCGACCGATCCCCTCCTCCTCGGCGAGGCGTAGgtgaggccatgatctgcccctccggcccttcgcccccctccatgcttccccgcctctgcgctgatctggtcccatctag
species | Zea mays |
transcript | GRMZM2G079236_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGCCACCTCAGATCCGGCGACCGATCCCCTCCTCCTCGGCGAGGCGTAG CCCGCAGAGCCGAGCCGGACAACACAGCCACGACCACGAGGCGTCGTCGCGEST: gi|71439144|gb|DR820194.1|DR820194
genomic: TCGCCACCTCAGATCCGGCGACCGATCCCCTCCTCCTCGGCGAGGCGTAGgtgaggccat ... tcccatctagCCCGCAGAGCCGAGCCGGACAACACAGCCACGACCACGAGGCGTCGTCGCG
EST: TCGCCACCTCAGATCCGGCGACCGATCCCCTCCTCCTCGGCGAGGCGTAG CCCGCAGAGCCGAGCCGGACAACACAGCCACGACCACGAGGCGTCGTCGCGEST: gi|211428869|gb|FL284136.1|FL284136
genomic: TCGCCACCTCAGATCCGGCGACCGATCCCCTCCTCCTCGGCGAGGCGTAGgtgaggccat ... tcccatctagCCCGCAGAGCCGAGCCGGACAACACAGCCACGACCACGAGGCGTCGTCGCG
EST: TCGCCACCTCAGATCCGGCGACCGATCCCCTCCTCCTCGGCGAGGCGTAG CCCGCAGAGCCGAGCCGGACAACACAGCCACGACCACGAGGCGTCGTCGCGEST: gi|89250676|gb|DY622462.1|DY622462
genomic: TCGCCACCTCAGATCCGGCGACCGATCCCCTCCTCCTCGGCGAGGCGTAGgtgaggccat ... tcccatctagCCCGCAGAGCCGAGCCGGACAACACAGCCACGACCACGAGGCGTCGTCGCG
EST: TCGCCACCTCAGATCCGGCGACCGATCCCCTCCTCCTCGGCGAGGCGTAG CCCGCAGAGCCGAGCCGGACAACACAGCCACGACCACGAGGCGTCGTCGCGEST: gi|149008859|gb|EE041074.2|EE041074
genomic: TCGCCACCTCAGATCCGGCGACCGATCCCCTCCTCCTCGGCGAGGCGTAGgtgaggccat ... tcccatctagCCCGCAGAGCCGAGCCGGACAACACAGCCACGACCACGAGGCGTCGTCGCG
EST: TCGCCACCTCAGATCCGGCGACCGATCCCCTCCTCCTCGGCGAGGCGTAG CCCGCAGAGCCGAGCCGGACAACACAGCCACGACCACGAGGCGTCGTCGCG
genomic: TCGCCACCTCAGATCCGGCGACCGATCCCCTCCTCCTCGGCGAGGCGTAGgtgaggccat ... tcccatctagCCCGCAGAGCCGAGCCGGACAACACAGCCACGACCACGAGGCGTCGTCGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTCGACACGGACTCAGACCCTCACACGCCTCCTCACCGGCTCACGACGTCGCCACCTCAGATCCGGCGACCGATCCCCTCCTCCTCGGCGAGGCGTAGgtgaggccatgatctgcccctccggcccttcgcccccctccatgcttccccgcctctgcgctgatctggtcccatctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC