Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGACGTGGACGTCTCGCGGCAGCTGAAGCAGATGACGAACTTCATCCGCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgtcctccgcccttcccccttgcgcgcgttctcttctagagggtctccaagtctggatctcgtgggaattgggatccaggtcgcgcaggttcg...

Basic information

species Zea mays
transcript GRMZM2G078839_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078839_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g12260.1 (Oryza sativa), 5'ss of exon 1
GGAGGACGTGGACGTCTCGCGGCAGCTGAAGCAGATGACGAACTTCATCCGCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgtcctcc--gcccttcccccttgcgcgcgttctcttctagagggtc--tccaagtctggatctcgtgggaattgggatccaggtcgcgcaggttcg
| | ||||  || ||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |   | ||  |   ||||| | |   | |||   ||| ||| |   |  | |   | ||||||||| | |    | ||||  ||     | |  || 
GAACGACGGCGATGTGGCGCGGCAGCTGAAGCAGATGACGGACTTCATCCGCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtatctatcatcccctagtttttcccacctttacccgt---cttgtagggatccgttgcggttttggatctcgggcgggc-gcgatcgcggagatccggtgtct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211006547|gb|FL418094.1|FL418094
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211192469|gb|FL416635.1|FL416635
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|33285524|gb|CF075319.1|CF075319
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211144595|gb|FL403032.1|FL403032
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCMGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211525105|gb|FL426868.1|FL426868
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGC-GAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211013872|gb|FL375772.1|FL375772
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211489591|gb|FL234464.1|FL234464
EST:     GCCAG-AGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211542090|gb|FL388056.1|FL388056
EST:     GCCAG-AGGCHGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211148550|gb|FL374618.1|FL374618
EST:     GCCA-GAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|91051896|gb|EB162314.1|EB162314
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|31998532|gb|CD662122.1|CD662122
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211529827|gb|FL377032.1|FL377032
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCNGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGANGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211317448|gb|FL406235.1|FL406235
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211390321|gb|FL404127.1|FL404127
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|149106149|gb|EE291827.2|EE291827
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211159732|gb|FL393702.1|FL393702
EST:     GCCA-GAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|71443317|gb|DR824367.1|DR824367
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|4753442|gb|AI657352.1|AI657352
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|76016568|gb|DT943738.1|DT943738
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211514323|gb|FL422105.1|FL422105
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211054870|gb|FL422547.1|FL422547
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211363569|gb|FL402337.1|FL402337
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|33467615|gb|CF244664.1|CF244664
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211095827|gb|FL430045.1|FL430045
EST:     GCCAG-AGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAA
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAA
EST: gi|211426054|gb|FL384928.1|FL384928
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211150053|gb|FL377210.1|FL377210
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|74234972|gb|DT642886.1|DT642886
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211433593|gb|FL370271.1|FL370271
EST:     GCCAG-AGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211379384|gb|FL388773.1|FL388773
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|15426680|gb|BI542502.1|BI542502
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211305121|gb|FL392834.1|FL392834
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|29947123|gb|CB816493.1|CB816493
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211494451|gb|FL428217.1|FL428217
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|29947032|gb|CB816448.1|CB816448
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211453771|gb|FL374399.1|FL374399
EST:     GCCA-GAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211082966|gb|FL420019.1|FL420019
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211518312|gb|FL387236.1|FL387236
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211162713|gb|FL378614.1|FL378614
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGAAT
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGA-T
EST: gi|211204256|gb|FL384225.1|FL384225
EST:     CCA-GAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGAT
genomic: CCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCG-CCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGAT
EST: gi|211506507|gb|FL387170.1|FL387170
EST:     GCCA-GAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211363160|gb|FL383522.1|FL383522
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211303215|gb|FL395615.1|FL395615
EST:     GCCA-GAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|71443402|gb|DR824452.1|DR824452
EST:     GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
EST: gi|211429178|gb|FL408897.1|FL408897
EST:     GCCA-GAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG                         GAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 116

GGAGGACGTGGACGTCTCGCGGCAGCTGAAGCAGATGACGAACTTCATCCGCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATCAGGCAGGAATATGACCGGAAAGAGAAGCAAGTTGGCATCAAGAAGAAAA


Block sizes: 40 (upstream exon), 49 (downstream exon)
Score: 111

GGAGGACGTGGACGTCTCGCGGCAGCTGAAGCAGATGACGAACTTCATCCGCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATCAGGCAGGAATATGACCGGAAAGAGAAGCAAGTTGGCATCAAGAAGAAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 120

GGAGGACGTGGACGTCTCGCGGCAGCTGAAGCAGATGACGAACTTCATCCGCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATCAGGCAGGAATATGACCGGAAAGAGAAGCAAGTTGGCATCAAGAAGAAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 200

GGAGGACGTGGACGTCTCGCGGCAGCTGAAGCAGATGACGAACTTCATCCGCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgt ... aaccactcagGAGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATCAGGCAGGAATATGACCGGAAAGAGAAGCAAGTTGGCATCAAGAAGAAAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGGACGTGGACGTCTCGCGGCAGCTGAAGCAGATGACGAACTTCATCCGCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtacccgtgtcctccgcccttcccccttgcgcgcgttctcttctagagggtctccaagtctggatctcgtgggaattgggatccaggtcgcgcaggttcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttcccc